LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g01222	atgggtaGAGGAAGAGTTGAATTGAAGAGAATAGAGAACAAAATTAACCGGCAAGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAATTATCTGTTCTATGTGATGCTGAAGTTGCTCTTATCATTTTCTCTAGCCGTGGCAAACTCTATGAATTTGGAAGTGTTGgCACTTCCAAAACTATTGAGCGTTACCAACGGTGCTCATTTAATCCTCAACAAGATGATCACCAAATCGATTGTGAAACCCAGCAGAGTTGGTACCAAGAGGTGTCTAAGCTGAAGGTTAAATATGAGTCTCTTCAAAAGACTCAGAGGCAGTTGCTTGGGGAAGATCTTGGACCTTTGAATATAAAGGAGCTGCATAATCTTGAGAAACAACTTGAAGGTGCTTTAGCACAAGCTAGGCAAAGAAAGACACAAATTATGGTTGAACAAATGGAAGAGCTTCGGAAAAGGGAACGCCATTTAGCAGACATGAATAAACAACTAAGACTCAAGcTTGAAAGCGAGGGATTTAATCTTAAAGCTATGGAAAGCTTGTGGAGTTCTAATAATTCAATTGCTGGAAATAGCAACTTTACTTTTCAGCCACCTCAAACCAACCCTATGACTATGAATATGGATATTCAAGCAGAACCCTTTTTGCAAATAGGATACCAACAGTATGTTCAAGCTGAGGCATCTAATGTTTCCAAGAGCATGGCTTGTCAGACTAACTTCATGCATGGATGGATCCTTTGA	756	0.3836	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTSKTIERYQRCSFNPQQDDHQIDCETQQSWYQEVSKLKVKYESLQKTQRQLLGEDLGPLNIKELHNLEKQLEGALAQARQRKTQIMVEQMEELRKRERHLADMNKQLRLKLESEGFNLKAMESLWSSNNSIAGNSNFTFQPPQTNPMTMNMDIQAEPFLQIGYQQYVQAEASNVSKSMACQTNFMHGWIL	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g01222	251	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01222	251	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01222	251	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01222	251	Pfam	K-box region	87	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tsu08g01222	251	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tsu08g01222	251	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01222	251	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01222	251	PANTHER	MADS BOX PROTEIN	1	237	-	-
	Tsu08g01222	251	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	1	237	-	-
	Tsu08g01222	251	CDD	MADS_MEF2_like	2	73	IPR033896	GO:0000977\|GO:0045944
	Tsu08g01222	251	Coils	Coil	147	171	-	-
	Tsu08g01222	251	Gene3D	-	13	82	IPR036879	GO:0003677\|GO:0046983
	Tsu08g01222	251	SUPERFAMILY	SRF-like	2	80	IPR036879	GO:0003677\|GO:0046983
	Tsu08g01222	251	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01222	251	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01222	251	Coils	Coil	122	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g01222	Tsu-Chr8	13520196	13529188	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g01222	1	251	MADS-box Gene Family	AT2G45650	64.341	5.07e-110	315

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Tsu08g01222		K-box	9.6e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g01222	K09264		-	gmx:100820061	404.445

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu08g01222	08	13520196	13529188	Tsu08g01222	08	13520196	13529188	ECH
	Tsu08g01222	08	13520196	13529188	Tsu04g01690	04	17899866	17906833	ECH
	Tsu04g02472	04	27922357	27936039	Tsu08g01222	08	13520196	13529188	ECH