LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g01221	ATGGTCATGATAACACTTGAAAACAAAGGTGCTTCGTTTACGATTTCTGATTGGTTACTTCGCGCTTCGGCTTCTGCAGGGGAGGAACTTCCATTGAACCACATTGTTCTTGACCCTTTTGCTTCCTTGTTGCATAGAGAAACAAAGATGGTGAGAggaaaaactcaaatgaaacGTATAGAAAATGCAACAAGTAGACAAGTAACATTCTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCTTTTGAATTGTCAGTGTTATGTGATGCTGAAGTTGCTCTTATTGTTTTCTCACCAAGAGGAAGGCTTTATGAATTTGCTAGCTCAAGCGTTTCAGAAATAATTGGACGATACCGCAATCATGCTAGGATTAATAATACTCCAAGTCCAACGACATCTGAATCAATTGAAAATATTCAGCATTTGAAGGAAGAAGTAGAAAACATGAGGAGGAAGATTGACCATCTTGAGACTTCAAAACGGAAATTCTTAGGAGAAGGTTTCGGGTCTTGTTCCATTGAAGAACTACAAAAGATAGAGCAACAGTTGGAGaaaagtataaataaaattcGAACAAAAAAGaCTCAAGTTTTTAGGGAACAAATTGAGCAGCTAAAAGAAAAGTATGATAACTATTCATCACAGGCAGCAAAAGAGAATCAGAGGGAAAGTATACATGAGGCTGAACCCTATGCAGATCAAAGCAGTCCAAGTTCAGATGTGGTGACTGAATTGTTCATTGGTCTTCCAGAAACAAGAACAAGGCGCATTAATCCTCCAAAGTTCTAA	789	0.3676	MVMITLENKGASFTISDWLLRASASAGEELPLNHIVLDPFASLLHRETKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSVSEIIGRYRNHARINNTPSPTTSESIENIQHLKEEVENMRRKIDHLETSKRKFLGEGFGSCSIEELQKIEQQLEKSINKIRTKKTQVFREQIEQLKEKYDNYSSQAAKENQRESIHEAEPYADQSSPSSDVVTELFIGLPETRTRRINPPKF	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g01221	262	Coils	Coil	132	166	-	-
	Tsu08g01221	262	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	59	106	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01221	262	ProSiteProfiles	K-box domain profile.	139	231	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tsu08g01221	262	ProSiteProfiles	MADS-box domain profile.	50	110	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01221	262	Coils	Coil	173	222	-	-
	Tsu08g01221	262	ProSitePatterns	MADS-box domain signature.	52	106	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01221	262	SMART	madsneu2	50	109	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01221	262	Gene3D	-	62	131	IPR036879	GO:0003677\|GO:0046983
	Tsu08g01221	262	PANTHER	MADS-BOX PROTEIN SOC1	50	251	-	-
	Tsu08g01221	262	PRINTS	MADS domain signature	72	87	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01221	262	PRINTS	MADS domain signature	52	72	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01221	262	PRINTS	MADS domain signature	87	108	IPR002100	GO:0003677\|GO:0046983
	Tsu08g01221	262	Pfam	K-box region	138	216	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tsu08g01221	262	PANTHER	MADS BOX PROTEIN	50	251	-	-
	Tsu08g01221	262	MobiDBLite	consensus disorder prediction	210	240	-	-
	Tsu08g01221	262	CDD	MADS_MEF2_like	52	121	IPR033896	GO:0000977\|GO:0045944
	Tsu08g01221	262	SUPERFAMILY	SRF-like	52	133	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g01221	Tsu-Chr8	13505702	13516953	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g01221	50	208	MADS-box Gene Family	AT2G45660	71.069	3.90e-78	231

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Tsu08g01221		K-box	2.2e-22	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g01221	-		-	mtr:MTR_8g033220	327.02

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu08g01221	08	13505702	13516953	Tsu08g01221	08	13505702	13516953	ECH
	Tsu04g01691	04	17925110	17945820	Tsu08g01221	08	13505702	13516953	PCT