Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01220 atggtgagaggaaaaactcaaatgaaacGTATAGAAAATGCAACAAGTAGACAAGTAACATTTTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCTTTTGAATTGTCAGTGTTATGTGATGCTGAAGTTGCTCTTATTGTTTTTTCACCAAGAGGAAGGCTTTATGAATTTGCTAGTTCAAGCACTTCAGAAACAATTGAACGGTACCGCAACCATAACAGGATAAATAATATACCAACGGCATCTGAATCAGTTGAGAATACTCAGCATTTGAGGCAAGAAGCAGAACACATGATGAAGAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTATAGGGTCTTGTTCCATTGATGAACTACAAAAGATAGAACAACAGTTGGAGAAGAGTGTAACCAAAATTCGAGCAAAAAAGACTCAGATTTTCAGAGAACAAATTGAGCACCTAAAAGAAAAGGAAAAAGCCCTAGTTGCAGAAAATCTCAAGCTCTCTGAGAAGTATGGTAACTTTTCATCACAGGCAGCAAAAAAGGATCAGAGAGAAAATATACATGAGACTGAACCCTATGCAGATCAAAGCAGTCCAAGTTCAGATGTGGAGACTGAATTATTCATTGGTCTTCCAGAAACAAGAACAAGGCGTATTAATCCTCCAAAGTTCTAG 678 0.3584 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSTSETIERYRNHNRINNIPTASESVENTQHLRQEAEHMMKKIDLLETSKRKLLGEGIGSCSIDELQKIEQQLEKSVTKIRAKKTQIFREQIEHLKEKEKALVAENLKLSEKYGNFSSQAAKKDQRENIHETEPYADQSSPSSDVETELFIGLPETRTRRINPPKF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01220 225 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Tsu08g01220 225 PANTHER MADS BOX PROTEIN 1 214 - -
Tsu08g01220 225 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu08g01220 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu08g01220 225 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Tsu08g01220 225 Coils Coil 151 171 - -
Tsu08g01220 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu08g01220 225 MobiDBLite consensus disorder prediction 176 225 - -
Tsu08g01220 225 PANTHER MADS-BOX PROTEIN SOC1 1 214 - -
Tsu08g01220 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu08g01220 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu08g01220 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu08g01220 225 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Tsu08g01220 225 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu08g01220 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu08g01220 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu08g01220 225 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01220 Tsu-Chr8 13486647 13497769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01220 1 159 MADS-box Gene Family AT2G45660 74.214 2.96e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu08g01220 K-box 3.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01220 - - mtr:MTR_8g033220 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01220 08 13486647 13497769 Tsu08g01220 08 13486647 13497769 ECH