Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g01207 | ATGGATAATCATGGATCTTCACCACCACCTTATGGATATCCAAACCCTTATGGATACCCTCCATATCCATATCCACCTCCACCCCAACATCAATCTCAAGGTCCTTCTGATCAATATCCATATCCATATCCACCTGCAACTACTAGTCCTTATTCATATGAATCATCATATCCACCAAATTCGTCACATTCGACGAATTACTCTTACTCTTAtccaccaccacctcctccaCCAAACCCTTTAGAGTATCAAACTCATCAACCATCTAATGCTTATCCTTATCCTTACCCTTACCCTCAACCTCAACCTCACCATTACCAATACCCTCCAATTAGTGATGAATCTAACCCTCCTCATAGTTCTGCTTACCCTCCTTTGAATGATCTTATGAGCAATGTTCAGATATCTGATAACACGCCAAATGCACCGCTGGCACGTGCACCGCCCGTACGTGTAATGGCACTTTCTCCAGTAATAACACATTCCTATTCAGCTttaaatgaagagaaaaaagaagagttTTATGGTCATGCTAGTCATAATTCCTTTTCAGGTTTTGAACATTCTTATTCTGGTTTGGGGGATTCACCAAGCTTTTCGGATTATTCTGGTGGTTCATTTGATGATTCGGTTCACAACCAAAGTTTACAGATTGTTCCGGTTCAGGGTAAAGGGTCGTTGAAAGTTTTGCTCTTGCATGGTAATTTAGATATATGGGTTCATGGAGCTAATAATCTTCCAAATATGGACATGTTTCATAAAACTTTAGGTGATGTGTTTGGTGGTAAGGGATCAATGAGTAGGAAGATTACTAGTGATCCTTATGTGTCGATTTCTTTGTCAAATGCTGTTGTTGGTAGGACATTTGTGATTAGTAATAGTGAAAATCCTGTTTGGGAACAGCATTTTCATGTTCCTGTTGCACATCATGCTGCTGAAGTGCATTTTGTTGTTAAGGATAGTGATGTGGTAGGTTCACAGCTTATTGGAGTTGTGACGATTCCGGTCGAACAATTATACTTAGGTGAAAGAGTACAAGGGACTTACCCTATTCTTAATAGCAATGGGAAGCCTTGTAAGCAAGGTGCTGTTTTGAGTGTTTCCATTCAGTTCATTCCAATAGAGAATCTGAGCATGTATCATCAAGGCGTTGGAGCAGGGCCGGAATATATTGGTGTGCCGGGAACATATTTTCCATTGAGGAGAGGTGGAATTGTTACTCTATATCAAGATGCTCATGTTCCGGATGGAAGTCTCCCTAATGTCATGCTTGATCATGGGATGCATTATGCTCATGGACAGTGTTGGCGTGATATCTTTGAGGCCATACGTCAGGCGAGACGTTTGGTTTACATTACTGGGTGGGCAGTGTGGCACAAAGTTACATTGATACGTGATCCTGCTAGTCGTAGTCATGCTTCAGAATACTCGCTTGGTGATCTTTTGAGGTCTAAGTCTCAGGAAGGAGTAAGAGTGCTTCTTCTTGTTTGGGATGATCCCACCTCAAGAAACATTCTTGGTTATAAAACAGATGGTGTCATGGCGACGCATGATGAGGAAACTCGGCGATTTTTCAAGCACTCTTCTGTGCAAGTGCTACTTTGTCCTCGCATGGCCGGAAAACGACATAGCTGGGCTAAACAACAGGAAGTTGGAACAATATATACGCATCATCAGAAGACTGTAATTGTAGATGCTGATGCTGGAAATAACAGAAGAAAAATTGTAGCCTTTGTTGGTGGACTTGATTTATGTGACGGCCGATATGATACTCCCCAACATCCGCTCTTTAGGACACTGAAGACACTGCATAAGGATGACTATCACAATCCTACTTTCACGGGTAATACTGGTGGCTGTCCACGGGAACCATGGCACGACTTGCATTCTAAAATTGATGGTGCAGCAGCTTACGATGTTTTGACAAACTTTGAGGAGCGCTGGTTAAGAGCTGCCAAACCTAAAGGGATAAAAAAGTTGAAGAGTTCATATGATGATGCTTTGCTTAAAATAGAAAGAATTTCAGATATTCTCCGTGTATCAGACATTCCATCCGGTGATGATAATCCTGCATCTTGGCATGCGCAGATATTTCGTTCAATTGATTCAAACTCTGTCAAGGGATTTCCAAAGGAGCCAAAAGATGCATCGCAAAAGAACCTTGTATGCGGGAAGAATGTGCTGATTGACATGAGCATACATACGGCATATGTAAAGGCCATCCGAGCTGCAcaacattatatttatatagagAATCAATATTTCATTGGTTCCTCATACAATTGGAACCAACATAAAGACCTTGGTGCTAATAATTTAATTCCAATGGAAATTGCGCTGAAGATTGCTGAAAAAATAAAGGCAAATGAGAGGTTTGCTGTATACATAGTTATTCCAATGTGGCCAGAGGGTGTTCCAACAGGAGCTGCCACTCAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTACGAGACAATTTACAATGCTTTGGTTGAAGTTGGGCTCGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGAAATCGAGAATCCATGGACATTAATGATAATATTAGTGTATCTGGAACTCCTCCCCCACCAAATACTCCACAAGCAAATAGTCGAAATAACCGGCGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCAGCAAACATCAATCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTGAATATACATGGGCAAGAAAACAGGGTTATCCACGCGGACAGGTTCATGGATACAGGATGTCTCTTTGGGCAGAACATACAGGCACAATCGAAGACTGTTTCTTACAACCGGAGAGCTTGGAGTGTGTCAGAAGAGTTCGAACAATGTCTGAAATGAACTGGAAACAATTTGCATCAAACGACGTGACAGAGATGAGAGGACATTTACTAAAGTACCCTGTTGAAGTATCAAGAAAGGGTAAGGTTAAACCTCTTCCTGGTCATGAAGAGTTTCCTGATGTTGGAGGGAAGATAGTTGGATCATTTATTGCCATTCAAGAAAATCTAAccatttga | 3126 | 0.404 | MDNHGSSPPPYGYPNPYGYPPYPYPPPPQHQSQGPSDQYPYPYPPATTSPYSYESSYPPNSSHSTNYSYSYPPPPPPPNPLEYQTHQPSNAYPYPYPYPQPQPHHYQYPPISDESNPPHSSAYPPLNDLMSNVQISDNTPNAPLARAPPVRVMALSPVITHSYSALNEEKKEEFYGHASHNSFSGFEHSYSGLGDSPSFSDYSGGSFDDSVHNQSLQIVPVQGKGSLKVLLLHGNLDIWVHGANNLPNMDMFHKTLGDVFGGKGSMSRKITSDPYVSISLSNAVVGRTFVISNSENPVWEQHFHVPVAHHAAEVHFVVKDSDVVGSQLIGVVTIPVEQLYLGERVQGTYPILNSNGKPCKQGAVLSVSIQFIPIENLSMYHQGVGAGPEYIGVPGTYFPLRRGGIVTLYQDAHVPDGSLPNVMLDHGMHYAHGQCWRDIFEAIRQARRLVYITGWAVWHKVTLIRDPASRSHASEYSLGDLLRSKSQEGVRVLLLVWDDPTSRNILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRMAGKRHSWAKQQEVGTIYTHHQKTVIVDADAGNNRRKIVAFVGGLDLCDGRYDTPQHPLFRTLKTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGAAAYDVLTNFEERWLRAAKPKGIKKLKSSYDDALLKIERISDILRVSDIPSGDDNPASWHAQIFRSIDSNSVKGFPKEPKDASQKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWNQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYNALVEVGLEAAFSPQDYLNFFCLGNRESMDINDNISVSGTPPPPNTPQANSRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARKQGYPRGQVHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRTMSEMNWKQFASNDVTEMRGHLLKYPVEVSRKGKVKPLPGHEEFPDVGGKIVGSFIAIQENLTI | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g01207 | 1041 | MobiDBLite | consensus disorder prediction | 69 | 83 | - | - | |
| Tsu08g01207 | 1041 | Pfam | Phospholipase D C terminal | 961 | 1031 | IPR024632 | - | |
| Tsu08g01207 | 1041 | Pfam | Phospholipase D Active site motif | 888 | 914 | IPR001736 | GO:0003824 | |
| Tsu08g01207 | 1041 | Pfam | Phospholipase D Active site motif | 554 | 588 | IPR001736 | GO:0003824 | |
| Tsu08g01207 | 1041 | CDD | C2_plant_PLD | 228 | 372 | - | - | |
| Tsu08g01207 | 1041 | SUPERFAMILY | Phospholipase D/nuclease | 714 | 973 | - | - | |
| Tsu08g01207 | 1041 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 232 | 374 | IPR035892 | - | |
| Tsu08g01207 | 1041 | Gene3D | Endonuclease Chain A | 698 | 943 | - | - | |
| Tsu08g01207 | 1041 | SMART | C2_3c | 235 | 348 | IPR000008 | - | |
| Tsu08g01207 | 1041 | PANTHER | PHOSPHOLIPASE D ALPHA 1 | 136 | 1041 | - | - | |
| Tsu08g01207 | 1041 | Gene3D | Endonuclease Chain A | 425 | 670 | - | - | |
| Tsu08g01207 | 1041 | ProSiteProfiles | C2 domain profile. | 208 | 349 | IPR000008 | - | |
| Tsu08g01207 | 1041 | SMART | pld_4 | 553 | 588 | IPR001736 | GO:0003824 | |
| Tsu08g01207 | 1041 | SMART | pld_4 | 887 | 914 | IPR001736 | GO:0003824 | |
| Tsu08g01207 | 1041 | MobiDBLite | consensus disorder prediction | 113 | 129 | - | - | |
| Tsu08g01207 | 1041 | SUPERFAMILY | Phospholipase D/nuclease | 428 | 652 | - | - | |
| Tsu08g01207 | 1041 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 24 | 991 | - | - | |
| Tsu08g01207 | 1041 | MobiDBLite | consensus disorder prediction | 864 | 883 | - | - | |
| Tsu08g01207 | 1041 | MobiDBLite | consensus disorder prediction | 92 | 106 | - | - | |
| Tsu08g01207 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 129 | - | - | |
| Tsu08g01207 | 1041 | Gene3D | C2 domain | 229 | 365 | IPR035892 | - | |
| Tsu08g01207 | 1041 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 553 | 588 | IPR001736 | GO:0003824 | |
| Tsu08g01207 | 1041 | Pfam | C2 domain | 234 | 351 | IPR000008 | - | |
| Tsu08g01207 | 1041 | PANTHER | PHOSPHOLIPASE D | 136 | 1041 | IPR015679 | - | |
| Tsu08g01207 | 1041 | MobiDBLite | consensus disorder prediction | 48 | 68 | - | - | |
| Tsu08g01207 | 1041 | MobiDBLite | consensus disorder prediction | 9 | 47 | - | - | |
| Tsu08g01207 | 1041 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 887 | 914 | IPR001736 | GO:0003824 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu08g01207 | Tsu-Chr8 | 13360611 | 13369313 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu08g01207 | 60 | 1041 | Phospholipase D Gene Family (Wang group) | AT2G42010 | 67.736 | 0.0 | 1412 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g01207 | K01115 | - | gmx:100805294 | 1536.93 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu08g01207 | 08 | 13360611 | 13369313 | Tsu08g01207 | 08 | 13360611 | 13369313 | ECH |