Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01203 ATGACTAGAAAAAAGGTGAAACTTGCCTTCATTTCAAATGATGCTGCAAGGAAAACAACATATAAGAAAAGACAAAAGGGTCTATTGAAGAAGGTTGATGAACTAAGCACCCTTTGCGGAATTGATGCATGCGCTATAATTTATGGGCCTTATGATCCTCAACCTGAGATTTGGCCATCACCTTCGGGAGTTCAAAATGTGCTCTCAAAATTCAGGACAATGCCTGAATTTGAGAAGagtaaaaaaatgttgaatcaaGAGACATTCATGCAACAAAGGATTTTGAAGGCTAAAGATCAGGTGAAGAAGCAAATGAAAGATAATAAGGAGAAAGAGATGACACTTCTAATGTTTCAATGTCTTAATTTAGGTGAAATTGTACACAACAATGTGTCAATGACTGATTTGAATCATCTTAATTGGTTGATCGATCAAAATTTGAAGGACATTGATAAAAGGTTGGAAGTAGaagataataattataataacgATCAAAGTCAAATCATGACTACTCAAAATCAAGTTTCAGTCCAAATGACACTACCACCACCGCCGCCGCTAGCAACACCTTGGAAGGAAGAAATGCCAATGATGATGGGTCATAGTGAGATGACAATGAATAATGTTGACATCATGCAAAGGAAGCTCTCGATGGATTTGATGGTGAATGGTAATGGGGATGAGACAATTTCATTTGGTCATCCTCATAATGCAAATCTTCAAAATGAATTTTGGCCTAATCCACTACCTTAA 753 0.3546 MTRKKVKLAFISNDAARKTTYKKRQKGLLKKVDELSTLCGIDACAIIYGPYDPQPEIWPSPSGVQNVLSKFRTMPEFEKSKKMLNQETFMQQRILKAKDQVKKQMKDNKEKEMTLLMFQCLNLGEIVHNNVSMTDLNHLNWLIDQNLKDIDKRLEVEDNNYNNDQSQIMTTQNQVSVQMTLPPPPPLATPWKEEMPMMMGHSEMTMNNVDIMQRKLSMDLMVNGNGDETISFGHPHNANLQNEFWPNPLP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01203 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu08g01203 250 PANTHER MADS BOX PROTEIN 2 181 - -
Tsu08g01203 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Tsu08g01203 250 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Tsu08g01203 250 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tsu08g01203 250 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu08g01203 250 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 181 - -
Tsu08g01203 250 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tsu08g01203 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu08g01203 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01203 Tsu-Chr8 13324769 13325521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01203 1 160 Type I MADS-box Gene Family AT5G48670 58.750 5.78e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu08g01203 SRF-TF 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01203 - - gmx:100813231 266.929