Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01197 ATGACAATTCCTCGTGGATTAGACAAACTTTATACTGGCAGCACTGATGGGACAGTTCGGACATGGGATTACCACACTGGAGAATGTGTTAATGTGGCAAATCTTCGCAGCGAAGTTACCTCTTTGATCAGCGACGGCCCGTGGATTTTTGTTGGTCTGCTAAACACTGTCATGGCATATAATATTGACACTGCTTCACAGTATACTCTTGATGGACCTATCGGGCAAGTCCGTGCCATGATTGTTGGCAATGATACACTTTTAGCTGGAGCAGAGAATGGTGTAATTTCTGCATGGGGAGGTAGCTCCGAAGGCAATTCACCTTTTAAACTTGTTGCATCACTGCATGGCCACACTAAATCTGTTGTTTGCCTTGTCATTGGAACGCTCACGAAGCTGTATTCAGGATCTGAGGACCAAAGTATTAAGGTTTGGGACCTTGAAACATTTGAGTGTAAGACGACACTCAATGCACATATAgatattgttgtttttggtattgaaaaattgattttcTTAGTTCATCATATTGTTATGTGCTTGAACTCAGGTATGGCTTTGAACGTGGCAAGGGTCGGTGAAACTGAAGGAATCGTTGCCGGAAATGCTGGATATTGTAATCCAAGAAAGCGCCATTTCGGAGCTGATAACACTGATGAACATCATTACGCAAAGAAGCACCATTTCGGAGATGACAAAGACAGGACACAGCTCGTTAAATCTTCCGTTTCTGAGGCTTCCCTTTCTAGGAAGCCCTCACCAAGTATCTGCAAATATTGGGTGAATGACAGATGTGTTCATGGTGATCGGTGCCCAAATTTACATTCGTGGTTTTACGGTGATGGGTTTACCACAATAGCAAAGCTTCAAGGACACAAGAAGCTTATCACTGGAATGACAATTCCTCGTGGATCAGACAAACTTTATACTGGCAGCACCGATGGGACAGTTCGGACATGGGATTACCACACTGGACAATGTGTTAATGTGGCAAATCTTGGCAGCGAAGTTACCTCTTTGATCAGCGAAGGCCCGTGGATCTTTGTTGGTCTGCTAAACACTGTCATGGCATATAATGTTGACACTGCTTCACAGTATACTCTTGATGGACCTATCGGGCAAGTCCGTGCCATGACTGTTGGCAATGATACACTTTTAGCTGGAGCAGAGAATGGTGTAATTTCTGCATGGGGAGGTAGCTCCGAAGGCAATTCACCTTTTAAACTTGTTGCATCACTGCATGGCCACACTAAATCTGTTGTTTGCCTTGTCATTGGAACGCTCACGAAGCTGTATTCAGGATCTGAGGACCAAAGTATTAAGGTTTGGGACCTTGAAACATTTGAGTGTAAGACGACACTCAATGCACATATAGATACAGTCACATCCCTTATTTGTTGGGACGGATTTTTGTTATCCGGTTCGTCTGATTGCACCATCAAGGTCTGGTTTCAACTCAAAGGGGGGAATTTTGAAGTTAAGCATACACAAAATGTGGAAAATGGTGTTGTTGCAATTTCTGGCATGCATGATCCAGATATGAAGCCTATATTGTTATGTTCTACCAGAGACAATTCGGTTCACCTCTATGAACTGCCATCATTTGTCGAGAGGGGTAGATTGTTTGCAAAGCAAGAAGTTGGATTAGCTTATGCAGGTCCCAGTGGACACTTTTTCACTGGAGACAGAAGTGGGTTGCTGACAGTCTCAAAATGGTTGGGAGAGTACAAGGATGTAAGATCCTCTTGA 1749 0.43 MTIPRGLDKLYTGSTDGTVRTWDYHTGECVNVANLRSEVTSLISDGPWIFVGLLNTVMAYNIDTASQYTLDGPIGQVRAMIVGNDTLLAGAENGVISAWGGSSEGNSPFKLVASLHGHTKSVVCLVIGTLTKLYSGSEDQSIKVWDLETFECKTTLNAHIDIVVFGIEKLIFLVHHIVMCLNSGMALNVARVGETEGIVAGNAGYCNPRKRHFGADNTDEHHYAKKHHFGDDKDRTQLVKSSVSEASLSRKPSPSICKYWVNDRCVHGDRCPNLHSWFYGDGFTTIAKLQGHKKLITGMTIPRGSDKLYTGSTDGTVRTWDYHTGQCVNVANLGSEVTSLISEGPWIFVGLLNTVMAYNVDTASQYTLDGPIGQVRAMTVGNDTLLAGAENGVISAWGGSSEGNSPFKLVASLHGHTKSVVCLVIGTLTKLYSGSEDQSIKVWDLETFECKTTLNAHIDTVTSLICWDGFLLSGSSDCTIKVWFQLKGGNFEVKHTQNVENGVVAISGMHDPDMKPILLCSTRDNSVHLYELPSFVERGRLFAKQEVGLAYAGPSGHFFTGDRSGLLTVSKWLGEYKDVRSS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01197 582 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 115 149 - -
Tsu08g01197 582 Gene3D - 106 166 IPR015943 GO:0005515
Tsu08g01197 582 Gene3D - 402 562 IPR015943 GO:0005515
Tsu08g01197 582 ProSiteProfiles Zinc finger C3H1-type profile. 251 278 IPR000571 GO:0046872
Tsu08g01197 582 ProSitePatterns Trp-Asp (WD) repeats signature. 133 147 IPR019775 -
Tsu08g01197 582 Gene3D - 3 105 IPR015943 GO:0005515
Tsu08g01197 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 10 32 IPR001680 GO:0005515
Tsu08g01197 582 SUPERFAMILY CCCH zinc finger 253 276 IPR036855 GO:0046872
Tsu08g01197 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 115 155 IPR001680 GO:0005515
Tsu08g01197 582 SUPERFAMILY WD40 repeat-like 9 167 IPR036322 GO:0005515
Tsu08g01197 582 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 219 580 - -
Tsu08g01197 582 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 2 163 - -
Tsu08g01197 582 Gene3D - 273 401 IPR015943 GO:0005515
Tsu08g01197 582 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Tsu08g01197 582 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Tsu08g01197 582 PRINTS G protein beta WD-40 repeat signature 133 147 IPR020472 -
Tsu08g01197 582 Pfam WD domain, G-beta repeat 286 321 IPR001680 GO:0005515
Tsu08g01197 582 Pfam WD domain, G-beta repeat 408 444 IPR001680 GO:0005515
Tsu08g01197 582 Pfam WD domain, G-beta repeat 110 146 IPR001680 GO:0005515
Tsu08g01197 582 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Tsu08g01197 582 ProSitePatterns Trp-Asp (WD) repeats signature. 431 445 IPR019775 -
Tsu08g01197 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 453 IPR001680 GO:0005515
Tsu08g01197 582 PANTHER - 219 580 IPR044715 -
Tsu08g01197 582 PANTHER - 2 163 IPR044715 -
Tsu08g01197 582 SMART WD40_4 361 398 IPR001680 GO:0005515
Tsu08g01197 582 SMART WD40_4 447 484 IPR001680 GO:0005515
Tsu08g01197 582 SMART WD40_4 406 444 IPR001680 GO:0005515
Tsu08g01197 582 SMART WD40_4 282 321 IPR001680 GO:0005515
Tsu08g01197 582 SMART WD40_4 490 531 IPR001680 GO:0005515
Tsu08g01197 582 SMART WD40_4 108 146 IPR001680 GO:0005515
Tsu08g01197 582 SMART WD40_4 63 100 IPR001680 GO:0005515
Tsu08g01197 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 330 IPR001680 GO:0005515
Tsu08g01197 582 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 447 - -
Tsu08g01197 582 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 326 - -
Tsu08g01197 582 SUPERFAMILY WD40 repeat-like 283 569 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01197 Tsu-Chr8 13278455 13291062 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01197 269 494 Eukaryotic Initiation Factors Gene Family AT2G46290 23.387 1.45e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01197 - - mtr:MTR_8g032850 724.161