Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01190 ATGGAGTTCGACATGCCCCAGTCAGTGGAACCAAGGATGTACACTGGTCCAGTAGCCGGTGTCAAAGTGTTGGTTGTGGATGCTAACTCAGCATGCCGAGCAGTTATATCAAAATCGCTTCTTTCACTTGGATATGAGGTTGCAACTGCTACACTAGCTTCCGAGGCTTTATACATTACCGGGGAGAAAAAGAACGAGATCAACCTTGTGGTTGTGGAGGCTCAGTTGCCTGACATGGAAATATATGAGCTCGTAGAGAAAATCAAAAGCTCTAATATTCCATCTTTTATTATGACTGCTTATGATTATGAAATTCCTTCCATATCAAAAGCACTACGTACAGGAGCTAAATGGTGTTTTAGAAAACCAGTTCCGATTTCTGATCTACAGCAGCTGTGGCGATTCGCAGTGTGGAACCGGTTTGAACCAACAGTCAGTGAAGAAGTATTTGACTATTGGTGGCCTCTGTCAGAAGTGGTTTCGAATGGTCTTGAGTACCAACCATCCTTGAATACAGGAGAACAGACTGTCGAAAGTGTAAATGGTAAAGATAATATATTACTCCTGAAAACCAAAAGGTGTACCTGGACTGATGATTTACAAAGGAAGTTCTTGGATGCTGTTCAAACAGCAGGAGTAAACGCTCGGCCGAAGACAATATTCGACCTTATGGATGTGGAAGGACTTAAGAAAGAGAGTGTTGCAAACTATTTAAAGGTTTGTTCCTGTTTAAAGAAATATCGTCAATCTATGAACCGGCATGCTAGTCCAATGGCACAGCATGTGAATGGAAAAGTTTCTAATGCTCTATCCTTAGGGAATCAAGGTGTTACAAAAAATCCAGCTTTCCATCAGAAGGATCTAAATACTGCTGATGGAAAAGTTTCTAATGCAGGACAACAATTGAATCTTTCAAAACTGCTGGCCTTTAACATGTTCGATCAAATTTTCCCTGCACTTCCTATTGCTCTACTACCactagagaaaaataaaaagattgatGAAGTTTTTAATGCAAAAGAAAGTCAGATGTTTACTGATGAGGATTTGAAAACGTGGTTGTCGACAATTCCAGACAATGTGACTCATGATGCTGTTGCTTGA 1104 0.3995 MEFDMPQSVEPRMYTGPVAGVKVLVVDANSACRAVISKSLLSLGYEVATATLASEALYITGEKKNEINLVVVEAQLPDMEIYELVEKIKSSNIPSFIMTAYDYEIPSISKALRTGAKWCFRKPVPISDLQQLWRFAVWNRFEPTVSEEVFDYWWPLSEVVSNGLEYQPSLNTGEQTVESVNGKDNILLLKTKRCTWTDDLQRKFLDAVQTAGVNARPKTIFDLMDVEGLKKESVANYLKVCSCLKKYRQSMNRHASPMAQHVNGKVSNALSLGNQGVTKNPAFHQKDLNTADGKVSNAGQQLNLSKLLAFNMFDQIFPALPIALLPLEKNKKIDEVFNAKESQMFTDEDLKTWLSTIPDNVTHDAVA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01190 367 Gene3D - 189 254 - -
Tsu08g01190 367 SUPERFAMILY Homeodomain-like 189 239 IPR009057 -
Tsu08g01190 367 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 192 237 IPR006447 GO:0003677
Tsu08g01190 367 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Tsu08g01190 367 Gene3D - 19 137 - -
Tsu08g01190 367 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 256 IPR045279 GO:0009736
Tsu08g01190 367 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Tsu08g01190 367 SUPERFAMILY CheY-like 20 138 IPR011006 -
Tsu08g01190 367 SMART REC_2 21 133 IPR001789 GO:0000160
Tsu08g01190 367 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR8-RELATED 20 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01190 Tsu-Chr8 13153797 13157345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01190 20 239 Response Regulator Gene Family AT2G25180 28.926 3.99e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu08g01190 Response_reg 9.7e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01190 - K14491 mtr:MTR_8g032710 328.176