Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01187 ATGATGGGTGTAAGTGGCAATTTGGTTAGTACTATTATTGGATTTGGAATGAGTGCAACTTTCATTGTATTTGTATGTGCAAGAATAATTTGTGGAAGATTTAGAGAAAGGCATGTGAGATCACGTACTATATATGAGATTCAAACAAGACCAGATATTGAACGAGCAGAATATCATGCTAATGAACCTGAACCTGCATTTGTTGCTGCAATCCCAACTTTAAATTTCAACCAAGAAGCCTTCAGTGCCATCCAATGTACACAGTGTGTGATATGTTTAGGAgattataaagaaaaagaagtatTGCGCATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATATGTGGCTAAGAAAACAATCTACATGTCCTGTATGTCGTTTAACATTGCATAATGTTTCTGAAGAAAAACATGTGAGACCTGTTACATTCACCATAATACAATCTCTCAATGAATCTAATACTCCTCCACAAGGGAACAATGGTAATGAGAGACAAGTTGATGAAGTTAATGCAAGAGAAACAGAATCAGGCATAGAGAGGTTATAA 561 0.3458 MMGVSGNLVSTIIGFGMSATFIVFVCARIICGRFRERHVRSRTIYEIQTRPDIERAEYHANEPEPAFVAAIPTLNFNQEAFSAIQCTQCVICLGDYKEKEVLRIIPYCGHTFHLSCIDMWLRKQSTCPVCRLTLHNVSEEKHVRPVTFTIIQSLNESNTPPQGNNGNERQVDEVNARETESGIERL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01187 186 SUPERFAMILY RING/U-box 88 137 - -
Tsu08g01187 186 Pfam Ring finger domain 88 131 IPR001841 -
Tsu08g01187 186 CDD RING-H2_EL5_like 88 131 - -
Tsu08g01187 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 137 IPR013083 -
Tsu08g01187 186 MobiDBLite consensus disorder prediction 154 170 - -
Tsu08g01187 186 MobiDBLite consensus disorder prediction 154 186 - -
Tsu08g01187 186 PANTHER OS11G0150450 PROTEIN 1 165 - -
Tsu08g01187 186 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Tsu08g01187 186 SMART ring_2 89 130 IPR001841 -
Tsu08g01187 186 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01187 Tsu-Chr8 13120536 13122720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01187 78 134 C3H Transcription Factor Family AT4G10160 54.386 6.91e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01187 - - cam:101509791 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01187 08 13120536 13122720 Tsu08g01187 08 13120536 13122720 ECH