Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01182 ATGAGAAGATTCATTGGTGTTAGACAAAGGCCATCAGGTAGATGGGTGGCTGAGATCAAAGACTCATCTCAACATGTAAGATTATGGCTTGGAACATATGACACACCAGAAGAAGCAGCTCGAGCTTACGATGAAGCGGCTCGAGCTTTACGCGGAGAGAATGCTCGAACCAACTTTGCCGTAGCCGCGGTATCAACAGACAGTACTACCCCATGTAGTGATGATCAAGGActaatatcatcatcaacaatatcaaatgaaggaaaaaataacaGTTTAACTTTTGCTTCATTGAAAGCAAAATTAAGCAAGAATCTTCAAAGTATTATGGCAAGAACAAGTGATCATAGCAATAACAAATTTTCAAAGAGTAGAGTGAGTGATCATTTTACCTTTGCTAGCATATTCAACCGTAGGAACAATTACAATCAAATCTCTGCTTTAGATATGAAGAACATTGAAAAAGTGGTGCAGCCTAGTATTATTGTTCCATCTAATATTGAATCTTCTAGTGTTTCTGATTGTAGTTCTGAATGGTTTGGATTTCAGAATCATGGattagactctgatggatctGATATAGTTGAGAATAATAATGTTAATATTAATGTTGGTGATCAAGGTTTTTTGGATCAACTTATGGGGTGGATTGATGATGATACTTCTGATATTTGTGAAGAAGGTTCAAGTAGTAAAAGGTTTAAGGTATCTTCATCTGTTCTTGTGCCACCAACTTTCTCTAATTCTCCTTATGATTGTGGTTCACCTTATAGTGGCTATGCTTCTCCATATAATAGTTGTGGATCCCCTTGTAATGGTTATGCTTCTCCTTATTATGGTAGcaagaaataa 852 0.3427 MRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAVAAVSTDSTTPCSDDQGLISSSTISNEGKNNSLTFASLKAKLSKNLQSIMARTSDHSNNKFSKSRVSDHFTFASIFNRRNNYNQISALDMKNIEKVVQPSIIVPSNIESSSVSDCSSEWFGFQNHGLDSDGSDIVENNNVNINVGDQGFLDQLMGWIDDDTSDICEEGSSSKRFKVSSSVLVPPTFSNSPYDCGSPYSGYASPYNSCGSPCNGYASPYYGSKK 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01182 283 CDD AP2 3 62 IPR001471 GO:0003700|GO:0006355
Tsu08g01182 283 Gene3D AP2/ERF domain 2 62 IPR036955 GO:0003700|GO:0006355
Tsu08g01182 283 PRINTS Ethylene responsive element binding protein signature 4 15 IPR001471 GO:0003700|GO:0006355
Tsu08g01182 283 PRINTS Ethylene responsive element binding protein signature 26 42 IPR001471 GO:0003700|GO:0006355
Tsu08g01182 283 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 228 - -
Tsu08g01182 283 Pfam AP2 domain 3 52 IPR001471 GO:0003700|GO:0006355
Tsu08g01182 283 SMART rav1_2 3 66 IPR001471 GO:0003700|GO:0006355
Tsu08g01182 283 ProSiteProfiles AP2/ERF domain profile. 3 60 IPR001471 GO:0003700|GO:0006355
Tsu08g01182 283 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 228 - -
Tsu08g01182 283 SUPERFAMILY DNA-binding domain 4 61 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01182 Tsu-Chr8 13073741 13074592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01182 3 60 AP2-EREBP Transcription Factor Family AT5G19790 74.138 3.05e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu08g01182 AP2 9.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01182 K09286 - gmx:100799444 340.887