Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01181 ATGGAAGACGAACGTGATGCTGAGTATGCAATAAGACGACTTGATCAAACTGAATTTGGTAGAAAGGGGCGCCGAATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTGCAACTAATACAAGACCATCAAAGACtttgtttattataaattttgatcCTGTTCACACCAGGACAAGGGATTTAGAGAGACACTTTGATCCCTATGGGAAAATAGCTAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACTAAAGCATTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTTATAACAGTGGAGTATGCTATAAGAGATGACGATGTCAGAAAGGATGGATACAGTCCTGATAGAAGAGGTCGTGGCTCTCCTGATGGGAGGTATGGTCGTGGTAGATCCCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCGGATTATGGCCGTGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAGTTAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTAGATCAAGTCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAAAGAGCTGAAAGCCCAATGAATGGGAGATATGATAGGTATGATAcaattaaattagttttttgcTTTAAAGATTTTGTTTGGTATGTTTATATACACCtcattatattttga 774 0.4134 MEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSATNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKIANLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVRKDGYSPDRRGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERAESPVNGRYDSRSPPPRRSSPASRPEPRGSPKYERAESPMNGRYDRYDTIKLVFCFKDFVWYVYIHLIIF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01181 257 MobiDBLite consensus disorder prediction 30 45 - -
Tsu08g01181 257 MobiDBLite consensus disorder prediction 130 147 - -
Tsu08g01181 257 SUPERFAMILY RNA-binding domain, RBD 1 45 IPR035979 GO:0003676
Tsu08g01181 257 MobiDBLite consensus disorder prediction 30 52 - -
Tsu08g01181 257 PANTHER - 1 231 - -
Tsu08g01181 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 119 IPR000504 GO:0003723
Tsu08g01181 257 Gene3D - 49 134 IPR012677 -
Tsu08g01181 257 MobiDBLite consensus disorder prediction 130 227 - -
Tsu08g01181 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 126 IPR000504 GO:0003723
Tsu08g01181 257 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 231 - -
Tsu08g01181 257 SMART rrm1_1 56 122 IPR000504 GO:0003723
Tsu08g01181 257 SUPERFAMILY RNA-binding domain, RBD 48 150 IPR035979 GO:0003676
Tsu08g01181 257 Gene3D - 1 48 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01181 Tsu-Chr8 13066604 13070813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01181 6 129 Eukaryotic Initiation Factors Gene Family AT3G16380 26.718 1.25e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01181 K12893 - gmx:100797778 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01181 08 13066604 13070813 Tsu08g01181 08 13066604 13070813 ECH