Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01179 ATGGTGGAAGAAGATAGAGTTGATGTTACAGTTGATACATGTTCAACAGAAGAATGGTTGTTGAACTCACAAGAGCTTGTTCCTATTGCTCTTACAAAAGCAAAAGAGGTAAAAGGGTTTCTTGTTAGATGGAAAATGATCATTTCAAAATTGGAACAAGTTCCATCAAAGTTATCAGATTTATCTAGCCACCCTTGCTTTTCGAAAAATGCTCTTTGCAAAGAACAATTGCAGGCTGTGTCAAAGACGCTAAGAGAAGCTATTGAATTAGCTGAGTTATGTTTGAAGGAAAAGTATGAAGGTAAACTAAGAATGCAAAGTGATCTTGATGCATTAATTGGAAAACTTGATTTGAATTTAAAGGATTGTAGCTTGTTAACGAAAACCGGTGTACTTGGTGAAGCTACTTTGCAATTCAATGTTTCTGGTTTATTAGCAGAATCAGATATTGAAATACATGGCAATATAAAGGAACTACTTGCGCGCCTTCAAATCGGTCATTTGGAATCGAAACACAAAGCTTTGGATAGATTGCATGATATTATGAGAGAAGATGAAAAGAATGTTTTGGCTGTTTTTTGTAGGAGCAATGTTGCTGCTTTGGTTCAATTGCTTACAGCAACATCAACAAGGATTAGGGAGAAAACAGTTAGTATTATATGTTCTCTTGTTGAATCGGGTGGTAGCTGCGAAAACTGGTTAGTTTCTGAAGGTGTTTTGCCACCTCTTCTAAGGCTTGTTGAATCAGGTAGTACTTTCGGAAAAGAAAAGGCTATTGTTTCTCTTCAAAAGTTGTCGATGTCAGAAGAAACAACTCGTGCGATTGTTGGACATGGAGGGGTTCCTCCGTTAATCGAGCTTTGTCAGGCTGGTGATTCTGTTTCACAATCTGCAGcaacttgtactttaaagaatatttCGGCCGTTCCAGAAGTGCGAAATGTTTTGGCCGAAGAAGGTGTTGTTAAGGTTATGATCAACCTACTCGGCAATGGAATTTTGTTAGGTACTAAAGAGTATGCTGCTGAGTGTTTGCAGAATCTCACTGCAAGCAATGAGAGTCTAAGAAAATCGGTTATATCAGAAGGCGGCGTTCGTAGTCTTTTGGTTTATCTTGATGGTCCACTTCCTCAAGAATCTGCAGTTGGTGCATTGAGGAATCTCGTCGGATCGGTTCCCGAAGAAACATTGGTTTCTCTTGGATTGCTTCCTTGTTTAGTTCATGTGTTAAAGTCAGGATCACTAGGCGCGAAACAAGGCGCAGCGTCGGTTATATGCAAAGTTTGTAGCACAATTGAGATGAAAAAAATGTTAGGTGAAGTTGGTTGCATACCTCTATTGATCAACATGCTTGAGGCTAAAGCAAATACTGCTAGAGAACTTGCAGCACAAGCAATTGCAAGCTTAATGATTCTGTCTGAGAATCGAAGAGAAGTTAAGAAAGACGATACAAGTGTGCCGAATTTGGTTCAATTGCTTGATCCAAGTCCACAGAATACAGCAAAGAAATATGCAGTTTGTTGTCTTGCATCACTTTCTTCATGTAAGAAATGTAAGAAGTTGATGATTTCATATGGAGCAATAGGATATTTGAAGAAGCTTATTGAAATGGAGATTCCAGGAGCTAAAAAGTTGGTTGAGAGATTGGAAAGAGGGAAACTCAGAAGCTTGTTTAGCAGAAAATAG 1686 0.3826 MVEEDRVDVTVDTCSTEEWLLNSQELVPIALTKAKEVKGFLVRWKMIISKLEQVPSKLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKTGVLGEATLQFNVSGLLAESDIEIHGNIKELLARLQIGHLESKHKALDRLHDIMREDEKNVLAVFCRSNVAALVQLLTATSTRIREKTVSIICSLVESGGSCENWLVSEGVLPPLLRLVESGSTFGKEKAIVSLQKLSMSEETTRAIVGHGGVPPLIELCQAGDSVSQSAATCTLKNISAVPEVRNVLAEEGVVKVMINLLGNGILLGTKEYAAECLQNLTASNESLRKSVISEGGVRSLLVYLDGPLPQESAVGALRNLVGSVPEETLVSLGLLPCLVHVLKSGSLGAKQGAASVICKVCSTIEMKKMLGEVGCIPLLINMLEAKANTARELAAQAIASLMILSENRREVKKDDTSVPNLVQLLDPSPQNTAKKYAVCCLASLSSCKKCKKLMISYGAIGYLKKLIEMEIPGAKKLVERLERGKLRSLFSRK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01179 561 Pfam Armadillo/beta-catenin-like repeat 269 308 IPR000225 GO:0005515
Tsu08g01179 561 Gene3D - 140 397 IPR011989 -
Tsu08g01179 561 Gene3D - 398 544 IPR011989 -
Tsu08g01179 561 SUPERFAMILY ARM repeat 152 540 IPR016024 -
Tsu08g01179 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 561 - -
Tsu08g01179 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 561 - -
Tsu08g01179 561 SMART arm_5 391 430 IPR000225 GO:0005515
Tsu08g01179 561 SMART arm_5 309 350 IPR000225 GO:0005515
Tsu08g01179 561 SMART arm_5 472 514 IPR000225 GO:0005515
Tsu08g01179 561 SMART arm_5 431 471 IPR000225 GO:0005515
Tsu08g01179 561 SMART arm_5 268 308 IPR000225 GO:0005515
Tsu08g01179 561 SMART arm_5 185 225 IPR000225 GO:0005515
Tsu08g01179 561 SMART arm_5 351 390 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01179 Tsu-Chr8 13055453 13059167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01179 311 537 U-box Gene Family AT2G23140 28.879 1.94e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01179 - - gmx:100809488 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01179 08 13055453 13059167 Tsu08g01179 08 13055453 13059167 ECH