Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01164 atgcaGCAAACAAATATTGAGGGACAAGAAGATGTGAACAGATCAATGCATGAGAATTTTGAGCAAAATGGTTTAAGAAGAAGTAGAGAAGAAGAACAAAGTAGATCTGGTAGTGATAACTTAGATGGTGTTTCTGGTGATGAACAAGATGCTGATGATAAACcaccaagaaaaaaaagatatcaCCGACACACTCCTCAACAGATTCAAGAGCTTGAATCTTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAACAAAGATTGGAACTTAGCAAAAGACTTTGTTTGGAAACTAGACAGGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACTCAATTGGAAAGACATGAGAACAATTTGCTTAGGCAAGAGAATGATAAGTTAAGAGCTGAAAATATGTCTATAAGGGATGCAATGAGGAATCCTATATGTTCAAATTGTGGTGGTCCGGCTATGATCGGCGAGATTTCACTTGAGGAACAACATCTTCGAATCGAGAATGCAAGGTTGAAGGACGAGCTAGATAGAGTTTGTGCACTTGCTGGAAAGTTTTTAGGCCGTCCGATTTCTTCATTACCAAACTCAAGTTTAGAGCTTGGTGTTGGTGGAAATAACAACAATGGTTTTAATGTGATGAACAATGTTTCTTCAACATTACCTGATTTTAGTGCTGGAATGTCTAATAACCCTTTGGCCATTGTGTCTCCTTCGACTCGACAAACACCTTTGGTGGGTGGATTTGATAGATCGGTTGAAAGGTCTATGTTTCTTGAACTTGCTTTGACCGCTATGGATGAGTTGGTTAAGATGGCACAAACTAGTGAGCCTCTTTGGATAAGGAGTATAGAAGGAGGAAGAGAAATTTTGAACCATGAGGAATATATGAGGACTTTCACTCCTAGCATTGGTTTGAAACCCAACGGCTTTGTCTCCGAGGCCTCTAGAGAGACCGGTACGGTCATTATCAATAGCTTAGCCCTTGTCGAGACTCTTATGGACTCGAATCGATGGATAGAAATGTTTCCTTGCATCATTGCAAGAGCCTCCACAAATGAAGTGATATCAAATGGAATAAATGGAACTAGAAATGGTGCACTTCAACTAATGCAAGCTGAGCTTCATGTGCTATCGCCTTTAGTTCCGGTCCGCGAGGTAAATTTCCTTAGGTTTTGCAAGCAGCATGCAGAAGGGGTTTGGGCTGTGGTTGATGTGTCCATTGATACCATAAGAGAAAATTCTGGAGCTACAAGTTTTATGAACTGTAGGAAGCTTCCTTCTGGTTGTGTTGTGCAAGATATGCCTAATGGTTACTCCaagGTGACATGGGTGGAACATGCAGAGTATGAGGAAAATCAAGTACACCAGCTGTACAGACCATTGTTGAGCTCAGGTATGGGATTTGGTGCTGCACGTTGGGTCGCTACCCTACAACGCCAGTGCGAGTGCCTTGCCATATTGATGTCATCTGCTGCACCCTCTCGAGACCATTCCGCAATAACAGCGGGTGGAAGGCGAAGCATGCTAAAGCTAGCGCAGCGAATGACGAACAACTTCTGCGCAGGGGTATGTGCCTCAACGGTCCACAAGTGGAACAAGCTTAGCCCTGGAAATGTGGATGAAGATGTGAGGGTGATGACACGGAAGAGCATTGATGATCCTGGTGAGCCACCGGGGATTGTGTTGAGCGCAGCCACATCGGTTTGGCTACCTGTTTCGCCTCAAAGACTGTTTGATTTTCTGCGTGATGAGAGGCTCCGTAGTGAATGGGATATACTATCTAACGGCGGTCCCATGCAAGAGATGGCTCATATTGCCAAAGGACAAGATCATGGAAACTGTGTTTCTCTTCTCCGAGCTAGTgCGATGAATTCGAATCAGAGTAGCATGTTGATACTACAAGAAACGTGCATCGATGAGGCAGGGTCGCTTGTAGTCTACGCGCCGGTTGATATTCCAGCCATGCATGTTGTGATGAACGGCGGCGATTCAGCTTACGTGGCATTACTACCATCCGGGTTTGCTGTTGTACCTGATGGACCTGGATCTCGTGGCTCTGAAAATGGTGACACCACCGCAAACGGAGGCGAGGCTCGTGTTAGCGGGTCGCTCTTAACCGTGGCGTTTCAAATCCTTGTGAATAGTCTCCCAACAGCAAAACTCACCGTTGAGTCCGTTGAAACGGTTAACAATCTCATTTCTTGCACCGTTCAGAAAATCAAAGCTGCACTTCATTGTGAAAGCTAA 2253 0.4394 MQQTNIEGQEDVNRSMHENFEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENNLLRQENDKLRAENMSIRDAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNNGFNVMNNVSSTLPDFSAGMSNNPLAIVSPSTRQTPLVGGFDRSVERSMFLELALTAMDELVKMAQTSEPLWIRSIEGGREILNHEEYMRTFTPSIGLKPNGFVSEASRETGTVIINSLALVETLMDSNRWIEMFPCIIARASTNEVISNGINGTRNGALQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRENSGATSFMNCRKLPSGCVVQDMPNGYSKVTWVEHAEYEENQVHQLYRPLLSSGMGFGAARWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLSPGNVDEDVRVMTRKSIDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVVPDGPGSRGSENGDTTANGGEARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01164 750 Coils Coil 109 141 - -
Tsu08g01164 750 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Tsu08g01164 750 SUPERFAMILY Bet v1-like 513 743 - -
Tsu08g01164 750 SUPERFAMILY Bet v1-like 254 485 - -
Tsu08g01164 750 SMART START_1 261 485 IPR002913 GO:0008289
Tsu08g01164 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 747 IPR042160 -
Tsu08g01164 750 SMART HOX_1 56 119 IPR001356 GO:0003677
Tsu08g01164 750 MobiDBLite consensus disorder prediction 11 37 - -
Tsu08g01164 750 MobiDBLite consensus disorder prediction 1 65 - -
Tsu08g01164 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 16 747 - -
Tsu08g01164 750 Pfam START domain 261 485 IPR002913 GO:0008289
Tsu08g01164 750 SUPERFAMILY Homeodomain-like 43 115 IPR009057 -
Tsu08g01164 750 ProSiteProfiles START domain profile. 252 488 IPR002913 GO:0008289
Tsu08g01164 750 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Tsu08g01164 750 Pfam Homeodomain 58 113 IPR001356 GO:0003677
Tsu08g01164 750 Gene3D - 44 131 - -
Tsu08g01164 750 CDD homeodomain 57 115 IPR001356 GO:0003677
Tsu08g01164 750 CDD START_ArGLABRA2_like 256 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01164 Tsu-Chr8 12844441 12851806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01164 18 750 Homeobox Transcription Factor Family AT3G61150 68.708 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu08g01164 START 3.5e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01164 K09338 - gmx:100811873 1283.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01164 08 12844441 12851806 Tsu08g01164 08 12844441 12851806 ECH
Tsu08g01164 08 12844441 12851806 Tsu04g01703 04 18089977 18098336 ECH