Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01163 atgTTGAGAGATCACGATTCAAGCTACTCCGATTCATTGTTTGTACGCATCGTGTCATGCAAGTTATGTAGACTTTATCGAAGGCGCGATTACTTTCATGGAATCCAACCATTAGATAATTTGGAGTTTCTTGAAATGCTTGGTGAAGGCGGTTTCGGTAGAGTTTTCCAATGTCGTAATGTCGAAGATAATAGCATTGTAGCCGTCAAACAAATTTATATCGATGATAGCGGCAATGGTGTTTCTAGTGCAATCATCAGAGAGGTCTCGTTTCTTAAAGAATTAATCCATCCCAACATTGTTAGATTATTAGATGTAACAAACAACAATGGCACAAGATTTGTGAGTTTGGTTTTTGAGTATCTTGATTGTAATCTTTCTCAATACATCGAAGAGAATCAACACTACGAGTCATGTTCATTTTTTAATGATGCAATGAATATAAAGAGTTTTATGTATCAGATTCTGTCTGCAATGAATTACTGCCATTGTCATGAGATTATTCATAGAGATTTGAAACCAACTAATCTTCTAATCGATCGTTCTGAAAAGCTAATCAAGTTGGCTGATTTTGGTTTGGCTAGAGAGTTAGGAGATCCTGACATGATTTATACTAATaagGTAGCAACTTTGTATTATAGAGCACCTGAAATATTGTTTGGATGTGGTAAATATTCAACTCCAGTCGATATTTGGTCTGTGGGTTGTATATTTGGTGAGATGTTACTTGGAAAACCAATACTCGAAGGAAAAGATTGGATGGAAGAATTAGAAACAATTTTCAGCCGTAATATTGCTGATCACGTGGTAGCTACCGTAAATGCATTGTACCGCAATTGTGGTGTGATCTTTAATCACATATTTGAGCGCAGCGTAACCATATAG 885 0.3582 MLRDHDSSYSDSLFVRIVSCKLCRLYRRRDYFHGIQPLDNLEFLEMLGEGGFGRVFQCRNVEDNSIVAVKQIYIDDSGNGVSSAIIREVSFLKELIHPNIVRLLDVTNNNGTRFVSLVFEYLDCNLSQYIEENQHYESCSFFNDAMNIKSFMYQILSAMNYCHCHEIIHRDLKPTNLLIDRSEKLIKLADFGLARELGDPDMIYTNKVATLYYRAPEILFGCGKYSTPVDIWSVGCIFGEMLLGKPILEGKDWMEELETIFSRNIADHVVATVNALYRNCGVIFNHIFERSVTI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01163 294 Pfam Protein kinase domain 43 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01163 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Tsu08g01163 294 ProSiteProfiles Protein kinase domain profile. 41 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01163 294 Gene3D Phosphorylase Kinase; domain 1 42 121 - -
Tsu08g01163 294 SUPERFAMILY Protein kinase-like (PK-like) 33 263 IPR011009 -
Tsu08g01163 294 SMART serkin_6 41 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01163 294 PANTHER CYCLIN-DEPENDENT KINASE 23 263 - -
Tsu08g01163 294 Gene3D Transferase(Phosphotransferase) domain 1 122 262 - -
Tsu08g01163 294 PANTHER CELL DIVISION PROTEIN KINASE 23 263 - -
Tsu08g01163 294 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01163 Tsu-Chr8 12829324 12832750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01163 38 261 Core Cell Cycle Gene Families AT3G48750 47.768 2.36e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Tsu08g01163 Pkinase 2.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01163 K02206 K04563 gmx:100799974 225.328