Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01118 ATGGTGAACCAGATCGAACAGACTAAGGTGATGTGGGGAGAATTGGAAGAAGACGATGGAGAGAATCTCGATTTCCTTTTACCGCCAATTCATGTCATAGGACCTGATGAAAACGGAATCAAGAAAGTGATTGAGCacaaatttgatgatgatggtaaTCAGGTTAAGATTACAACAACAACTCGCACTCGCAAAATCGCTAACGCGCGTGTTAGTAAACGCGCCGTTGAACGTCGCTCTTTGCCTAAGTTTGGTGATGCTGTTCATGAAGATGTTGGTAGTCGTCTTACTATGGTTTCTACTGAAGAGATCGTTCTTGAGCGCCCTAAGCCAATTGGTTCCCAAAAGGAGGTGGCAACTGCTGACCCACTTGCTACAACAGGTGCTGTTCTTATGCAGTGCAGGAATTGTGGGAAGAAGGGTGACCATTGGACTGCAAGGTGTCCAAATCCAAAATCGGATCTCTCACAACCATCTGAGGTATTCGTTGATAATGATAAGCCTGCAACATCAAATACTGGTAGGTATGTACCTCCTTGCATGCAACCTGGTGCAGGTAAGACTGGTGTGTCAGACAGGAAGAGGAATGATGAGAATTCTGTGCGGGTAACCAACCTCTCGGAGGACACAACTGAGCCTGATTTGCATGAACTATTCCGTCCTTTTGGTTCTATCAGCAGAGTCTATGTTGCTAATGATAAAATTACTGGCATGAGTAGGGGGTTTGGTTTTGTCAACTTTGTCAGCAGGGAAGATGCTCAGAGAGCTATTAACAAACTCAATGGATATGGCTACGACAGTCTCATCCTGAAAGTTGAATGGGCCACCCCAAGAACAACTTAA 843 0.4413 MVNQIEQTKVMWGELEEDDGENLDFLLPPIHVIGPDENGIKKVIEHKFDDDGNQVKITTTTRTRKIANARVSKRAVERRSLPKFGDAVHEDVGSRLTMVSTEEIVLERPKPIGSQKEVATADPLATTGAVLMQCRNCGKKGDHWTARCPNPKSDLSQPSEVFVDNDKPATSNTGRYVPPCMQPGAGKTGVSDRKRNDENSVRVTNLSEDTTEPDLHELFRPFGSISRVYVANDKITGMSRGFGFVNFVSREDAQRAINKLNGYGYDSLILKVEWATPRTT 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01118 280 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 280 - -
Tsu08g01118 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 266 IPR000504 GO:0003723
Tsu08g01118 280 SMART rrm1_1 200 273 IPR000504 GO:0003723
Tsu08g01118 280 PIRSF Transl_init_eIF-3_RNA-bind 1 280 IPR017334 GO:0003743|GO:0005737|GO:0005852
Tsu08g01118 280 CDD RRM_eIF3G_like 200 275 IPR034240 -
Tsu08g01118 280 SUPERFAMILY RNA-binding domain, RBD 195 278 IPR035979 GO:0003676
Tsu08g01118 280 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 279 IPR017334 GO:0003743|GO:0005737|GO:0005852
Tsu08g01118 280 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 280 - -
Tsu08g01118 280 Gene3D - 152 280 IPR012677 -
Tsu08g01118 280 Pfam Eukaryotic translation initiation factor 3 subunit G 32 150 IPR024675 -
Tsu08g01118 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01118 Tsu-Chr8 12275633 12277940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01118 3 280 Eukaryotic Initiation Factors Gene Family AT3G11400 57.009 2.09e-120 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01118 K03248 - gmx:100818725 399.823