Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01117 atggatatagcttttagcttaccACAATCGAAAGTAGCTTTGACTGGTTTGGATTCTTGTGTTTTGTTTAGACGTAGAAGCTTTGGATGTGGTTTTGTTTGTAATTCAAAGAATATTTTGAAAGGTTGTTGTGGAAGAGAGTTTCGAGTTTCGAATTTGAAGTCGAATTTGTTGTGTAGGAGTAGTAAACTTTTTAGGGGAAATAGGGGGGTTTGGTTGAAGTGTCTGGGAAATGATTCGTTTGATTATGATAATGGGAATGGTAGGAGTGTTGATAATTTCAAAGGTTTGAATGGGGATTCTGATTTGGGGTCGATTTCCGGTGCGGAATTGGGTGAACCGATTGGAGAAGTTGGGGGTCAAGTAGAAGTAGAGGTACAAAATGTGGATGAATTGAAGGAATTGTTGCAAAAGGCTTTGAAAGAATTAGAAGCTGCTAGAGTGAATAGTATTGTGTTTGAGGAAAAGGTTAAGAAGATATCGGAGACTGCGATATCTTTGCAGGATGAAGCAGCAAGAGCTTGGAATGATGTTAATTCTACGCTTGATGTTGTTCAGGAAATTGTTTGTCAAGAATTTATTGCTAAAGAAGCTGTTCAAAATGCAACAATGGCTCTTTCTTTAGCTGAGGCAAGGCTTCAAGTAGCTGTTGAATCTTTGGAGGTTGCAAATGAAGATTATAGTTCTGTGCGAGGTTCGAACGAGAGTGATGGTGGTAATGGTATAGTGCAAGAGGAGAAAGAACGCATAGTTGCTCAGGAAGATATCAAGGAATGTCAGACAATTTTAGCGTGTTGTGAGGCTGAGTTGAAGCGATTGCAAAGTAAAAAAGAGGAGTTGCAAAATGAAGTGAACAAATTGCATGAAATTGCTGAAAAAGCACAGTTGATTGCAGTTAAAGCGGAGGAGGATGTCACAGACATAATGCATTTGGCCGAGCAAGCTGTTGCCTTTGAACTAGAGGCTGCAAAACGTGTTAACGATGCAGAGATTGCATTTCAGAGAGCAAACAAGTCTGTCACTGGCATTAATGACGATACCACTGACACTCTACAAGTACCAGATGTTGTGGCCCTCCCTAAGGAGGAGAATTTGGTTCAACAATTTTCTGGTGATGCTGCTGTTAAAGGAGAGCTCGAGTTATCAAGTAATGACGAGGCTTTGCTTGCCACGGGATCATTAGAGACACAGTCTAATAAAACCAGCCAAATCTCGGAAGACGTAACTCAATCTGATTATACGAGTGATCTTGATAATGGACAGTTAAGCTTAGACTCTTCTAAAGAATCTGAACCCGAAGTAGAGAAGTCAAAAAGTGcagttcaaacaaaaaaacaggaAAACCAGAAAGATTTGACTAGAGATAATTCACCATCTGCTCCCAAGACATCATTGAAGAAATCTTCTCGATTTTTTCCtgcatcatttttctcttctagCACAGATGAGATTGATTACTCACTAGCATCAGTTTTCAATGGTCTTGTGGAATCTGCACAGAATCAATTGCCCAAGCTGATTGTTGGGTTATTATTAATTGGAGCAGGGTTCACCTTCTATTCCAACCGAGCAGAGAGGAGTTCTCAGCTGCTTCAGCAGCCTGAAGTCATTTCAACCACTGTTGAAGAAGTTTCCTCAAGTGCAAAGCCTCTAGTTAGACAACTTCAGGAACTCCCCAATAGAATTAAGAAAGCTATTGCATCGCTACCTGATCAAGAGGTGAATGATGAGGAAGCCTCCCTCCTTGACATGCTCTGGCTATTACTTGCAAGTGTTATATTTGTCCCGCTATTTCAAAAAATTCCTGGAGGCAGTCCTGTTCTTGGTTACTTGGCTGCTGGAATCTTGATTGGGCCTTATGGACTCTCCATCATTCGCAATGTTCACGGGACAAAATCAATAGCCGAATTTGGAGTTGTTTTCCTATTATTTAATATTGGTCTGGAGCTCTCTGTGGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCTCAGGTTTTGTTGACTGCTGCAGTTATTGGGTTGGTGGCTCATTATATTTGTGGCCAAGCTGGCCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCATCGACTGCTGTTGTTTTGCAGGTATTACAGGAGAGAAGCGAGAGCACATCGCGACATGGGCGAGCTACATTTTCCGTGTTACTTTTTCAGGATTTGGCCGTTGTTGTCTTGCTAATACTCATACCTCTTATTTCACCTAATTCTTCCAAAGGAGGGGTTGGCTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCTGCAGTTTCCATCACTGCCATAATTGCAGGTGGACGATTGCTCCTTCGACCTATATATAGGCAGATTGCAGATAATCAGAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTGTTCTTGGGACCAGCCTTCTCACTGCCAGGgCAGGCCTGTCCATGGCTTTGGGAGCATTTTTGGCTGGTTTGCTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTAGGCCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTCTTTCAAACTTTCCAGTCATCATAGGGACACTGGGACTCTTGATATTTGGCAAGACCCTCTTGGTTGCTTTGATTGGCAAAATTTTTGGTATTTCAATCATATCTGCCATTAGAGTTGGGCTTCTTCTTGCTCCTGGAGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGTATAATGTCTTCCCAGTTGTCCTCTTTGCTGTTCCTTGTTGTGGGAATTTCTATGGCGCTTACGCCATGGTTGGGTGAAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAACATGATGTTCGAAGCTTATTACCTGTAGAAAGTGAGACAGATGATCTGCATGATCATATCATTATTTGTGGATTTGGGCGAGTTGGCCAGATCATTGCACAACTTCTTTCTGAGCGACTTATTCCATTTGTTGCGCTAGATGTGCGAAGTGATAGAGTGGCAGTTGGGCGCTCCTTGGATCTCCCTGTGTACTTCGGTGATGCTGGTAGTCGAGAGGTCCTACATAAAGTTGGGGCTGGAAGGGCAAGTGCTGCAGCAATAACTCTAGATTCCCCTGGTGCAAACTATAGAACGGTTTGGGCTCTGAGCAAACACTTCCCAAATGTGAAGACTTTTGTTCGTGCTCATGATGTTACTCACGgattgaatttagaaaaagctGGAGCTACTGCCGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCAGCAGTGCTTTCTGAGGTTAAACTTCCTGCATCCGAGATTGCGGCAACAATTAATGAATTTAGATCCCGTCACCTGGCTGAGCTTACAGAACTATCTGAAACAAGTGGAAGTTCTCTTGGATATGGATATAGCAGAATCATGAGCAAACCCAAATCCCAATCTCCCGATTCAATTGATGACACCCAAATCCTTGAAGGGTCGACATGA 3552 0.4172 MDIAFSLPQSKVALTGLDSCVLFRRRSFGCGFVCNSKNILKGCCGREFRVSNLKSNLLCRSSKLFRGNRGVWLKCLGNDSFDYDNGNGRSVDNFKGLNGDSDLGSISGAELGEPIGEVGGQVEVEVQNVDELKELLQKALKELEAARVNSIVFEEKVKKISETAISLQDEAARAWNDVNSTLDVVQEIVCQEFIAKEAVQNATMALSLAEARLQVAVESLEVANEDYSSVRGSNESDGGNGIVQEEKERIVAQEDIKECQTILACCEAELKRLQSKKEELQNEVNKLHEIAEKAQLIAVKAEEDVTDIMHLAEQAVAFELEAAKRVNDAEIAFQRANKSVTGINDDTTDTLQVPDVVALPKEENLVQQFSGDAAVKGELELSSNDEALLATGSLETQSNKTSQISEDVTQSDYTSDLDNGQLSLDSSKESEPEVEKSKSAVQTKKQENQKDLTRDNSPSAPKTSLKKSSRFFPASFFSSSTDEIDYSLASVFNGLVESAQNQLPKLIVGLLLIGAGFTFYSNRAERSSQLLQQPEVISTTVEEVSSSAKPLVRQLQELPNRIKKAIASLPDQEVNDEEASLLDMLWLLLASVIFVPLFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTKSIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLLTAAVIGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERSESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVSITAIIAGGRLLLRPIYRQIADNQNAEIFSANTLFVVLGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIIGTLGLLIFGKTLLVALIGKIFGISIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLGEGGQLIASRFEQHDVRSLLPVESETDDLHDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRSLDLPVYFGDAGSREVLHKVGAGRASAAAITLDSPGANYRTVWALSKHFPNVKTFVRAHDVTHGLNLEKAGATAVVPETLEPSLQLAAAVLSEVKLPASEIAATINEFRSRHLAELTELSETSGSSLGYGYSRIMSKPKSQSPDSIDDTQILEGST 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01117 1183 MobiDBLite consensus disorder prediction 392 466 - -
Tsu08g01117 1183 Coils Coil 256 297 - -
Tsu08g01117 1183 ProSiteProfiles RCK N-terminal domain profile. 989 1111 IPR003148 GO:0006813
Tsu08g01117 1183 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1182 - -
Tsu08g01117 1183 Coils Coil 122 149 - -
Tsu08g01117 1183 Gene3D - 986 1149 - -
Tsu08g01117 1183 Gene3D - 577 962 IPR038770 -
Tsu08g01117 1183 MobiDBLite consensus disorder prediction 392 427 - -
Tsu08g01117 1183 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 986 1127 IPR036291 -
Tsu08g01117 1183 MobiDBLite consensus disorder prediction 428 452 - -
Tsu08g01117 1183 Pfam Sodium/hydrogen exchanger family 587 957 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tsu08g01117 1183 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 588 868 IPR004771 GO:0006812|GO:0008324|GO:0016021
Tsu08g01117 1183 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1182 - -
Tsu08g01117 1183 MobiDBLite consensus disorder prediction 1161 1183 - -
Tsu08g01117 1183 Pfam TrkA-N domain 990 1103 IPR003148 GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01117 Tsu-Chr8 12261790 12271574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01117 128 1182 Inorganic Solute Cotransporters AT4G00630 73.502 0.0 1417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01117 - - gmx:100791174 1658.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01117 08 12261790 12271574 Tsu08g01117 08 12261790 12271574 ECH