Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01115 ATGTCTTTCACTGGAACTCTTGACAAATGCAAGGCATGTGACAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAAATATACCATATCATAAAACTTGCTTCAAATGTAGTCATTGCAATGGATGTCTTACGATGAGCACATACTCTTCCATGGATGGAATTCTCTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTCGCAAAGAATTCTGACAAGCAAAATGACCTGAATAGGACACCAAGTAGACTATCCTCCATGTTCAGTGGTACCCTGGACAAATGCGCGACTTGCTCAAAAACTGTCTACCCACTGGAAAAGgTGACACTGGAAGGTGAATGCTACCACAAGAACTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCTCTTGATGGTGTCCTCTACTGCAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGTAACTATAGCCATGTACTAAAATCTGCACACAAGAGGAATGGTTCTTCTCCAATTTCTGAAACAACACTTGAAGTTGTTGAAGAGCCTTCACAACCACCGGCAGAAGCACAAGCAGAAGCAGAAGCTGAAGCTGAAGCACCAGAAGACCAACCAGCTGAAGAAACCTCTTGA 663 0.4223 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKTCFKCSHCNGCLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKNSDKQNDLNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVTLEGECYHKNCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNGSSPISETTLEVVEEPSQPPAEAQAEAEAEAEAPEDQPAEETS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01115 220 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Tsu08g01115 220 Gene3D Cysteine Rich Protein 100 168 - -
Tsu08g01115 220 MobiDBLite consensus disorder prediction 175 220 - -
Tsu08g01115 220 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
Tsu08g01115 220 Gene3D Cysteine Rich Protein 5 72 - -
Tsu08g01115 220 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Tsu08g01115 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Tsu08g01115 220 Pfam LIM domain 10 65 IPR001781 -
Tsu08g01115 220 Pfam LIM domain 104 159 IPR001781 -
Tsu08g01115 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Tsu08g01115 220 MobiDBLite consensus disorder prediction 205 220 - -
Tsu08g01115 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Tsu08g01115 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Tsu08g01115 220 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Tsu08g01115 220 PANTHER OS06G0237300 PROTEIN 1 205 IPR045268 GO:0051015
Tsu08g01115 220 SMART lim_4 103 155 IPR001781 -
Tsu08g01115 220 SMART lim_4 9 61 IPR001781 -
Tsu08g01115 220 MobiDBLite consensus disorder prediction 175 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01115 Tsu-Chr8 12230007 12231955 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tsu08g01115 LIM 2.3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01115 - K09377 gmx:100800234 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01115 08 12230007 12231955 Tsu08g01115 08 12230007 12231955 ECH