Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01108 atgggAAGAACACCTTGTTGTGACAAAATGGGGTTGAAGAAAGGTCCATGGACAactgaagaagatgaaattctTGTTAATTTTATCAAGAAAAATGGTGGTCATGGTAGTTGGCGTTCTCTTCCTAAGTTAGCAGgCCTTCGTCGTTGCGGTAAGAGTTGCCGACTAAGATGGACGAACTACCTGAGACCTGATATTAAACGCGGTCCCTTTACACCTCAGGAAGAAAAACTAGTCATACAGCTTCATGCCATTCTTGGAAATAGGTGGGCTGCAATAGCCTCACAACTAGCAGGAAGAACAGACAATGAGATAAAGAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACTCATGAACCAATAGCCTCATCAAATTACTATCCAATTTCCAAATCAAATTCATCTATCGCCACACGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACTCATCTTTATTCAACAATAACAACATTACTTCTTTTGCAAGCAACAATTCTGCTTCTGATTCTGACTATTTCCTTAAGATATGGAACTCTGAAGTTGGACAATCTTTTCGCTCCGTTCGTAAATCAGACAACGACGATGACGACGATAAAACTAGATGCATAAGTTCCATGTCTCAAGAAGGGTCATCTTGTAATAATACAAAATGTGGATCAGTTTCTGCTACTACTACTGTAACAGATTTGGCTTCATCAACTCTTGCAAGCAATTTGAAACAAGATTTTGAATGGAGAAACTACAAGTCATTTGATATTGGTTGTGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCATTGCAGCTTTTGTTGGATTTTCCTTCTAACAATGACATGAGCTTCTTAGAATAA 921 0.3789 MGRTPCCDKMGLKKGPWTTEEDEILVNFIKKNGGHGSWRSLPKLAGLRRCGKSCRLRWTNYLRPDIKRGPFTPQEEKLVIQLHAILGNRWAAIASQLAGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSNYYPISKSNSSIATRHMAQWESARLEAEARLSKDSSLFNNNNITSFASNNSASDSDYFLKIWNSEVGQSFRSVRKSDNDDDDDKTRCISSMSQEGSSCNNTKCGSVSATTTVTDLASSTLASNLKQDFEWRNYKSFDIGCDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01108 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu08g01108 306 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Tsu08g01108 306 MobiDBLite consensus disorder prediction 205 221 - -
Tsu08g01108 306 SMART sant 13 64 IPR001005 -
Tsu08g01108 306 SMART sant 67 115 IPR001005 -
Tsu08g01108 306 CDD SANT 16 62 IPR001005 -
Tsu08g01108 306 MobiDBLite consensus disorder prediction 205 235 - -
Tsu08g01108 306 PANTHER PROTEIN ODORANT1-LIKE 1 305 - -
Tsu08g01108 306 Gene3D - 70 117 - -
Tsu08g01108 306 Gene3D - 11 68 - -
Tsu08g01108 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 305 - -
Tsu08g01108 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu08g01108 306 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tsu08g01108 306 CDD SANT 70 113 IPR001005 -
Tsu08g01108 306 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu08g01108 306 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu08g01108 306 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01108 Tsu-Chr8 12116320 12119494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01108 1 306 MYB Transcription Factor Family AT3G61250 60.390 1.21e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g01108 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01108 K09422 - gmx:100800408 398.282