LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g01107	ATGatgaacaataacaacaatagaGCGAGATATCCACCACCTGGGATCGGTCCTGGACGTGGTGGTTCGAATCCCAATGTGAATCTGAACCAAAACCCAAACCAGAACCCTAATTTGAACCATCAGTTTCAACAAAGAGGACCTTATAATCACCATAaccagcaacaacaacaacagcaccAACAACAACAGAATCAGTaccagcagcagcagcaacaattCTATGCGCAGAGAGAAAGGCAGCAACAACAAAATCAGCAGatacagcagcagcagcagtgGTTGAGAAGGGCGCAGTTGGGTGGTTCCGAATCAAATGTTGTTGCTGATGAGGTTGAGAAGACCGTGCAATCGGAAGCTAGTGACCCGAGTTCTCAAGACTGGAAGGCAAGACTAAAGATTCCGCCAGCGGATACACGTTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACCGGCAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATCTTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATCTGAAAATCCAAGTTATGGTTACAACAGGTGGTACTAGTCTAAAAGATGACATAATGCGTTTATATCAACCGGTTCATTTACTGGTTGGAACCCCGGGAAGGATATTAGATCTTGCGAAGAAGGGTGTTTGCGTTCTTAAAGATTGCTCCATGCTTGTCATGGATGAGGCTGATAAGCTACTCTCTCCAGAGTTCCAGCCCTCAATTCAACAGCTGATTAATTTTCTCCCTACAAACCGTCAAATCCTGATGTTTTCAGCAACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTCACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTATTTTCCAAgCTGCAAATAAACCAGTCAATTATCTTCTGCAATTCAGTGAATCGGGTCGAACTTCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGCTTCTATATTCACGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAACTTTGATTTTCCCAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGACCGCTTTAATTTATATAGGATCGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGTCGGTGA	1581	0.389	MMNNNNNRARYPPPGIGPGRGGSNPNVNLNQNPNQNPNLNHQFQQRGPYNHHNQQQQQQHQQQQNQYQQQQQQFYAQRERQQQQNQQIQQQQQWLRRAQLGGSESNVVADEVEKTVQSEASDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLINFLPTNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g01107	526	MobiDBLite	consensus disorder prediction	23	78	-	-
	Tsu08g01107	526	Gene3D	-	111	356	IPR027417	-
	Tsu08g01107	526	Coils	Coil	53	98	-	-
	Tsu08g01107	526	CDD	DEADc_DDX6	154	354	-	-
	Tsu08g01107	526	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	152	180	IPR014014	GO:0003724
	Tsu08g01107	526	SMART	helicmild6	403	484	IPR001650	-
	Tsu08g01107	526	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	183	353	IPR014001	-
	Tsu08g01107	526	Pfam	Helicase conserved C-terminal domain	378	484	IPR001650	-
	Tsu08g01107	526	Gene3D	-	357	525	IPR027417	-
	Tsu08g01107	526	SMART	ultradead3	171	367	IPR014001	-
	Tsu08g01107	526	Pfam	DEAD/DEAH box helicase	177	341	IPR011545	GO:0003676\|GO:0005524
	Tsu08g01107	526	CDD	SF2_C_DEAD	364	493	-	-
	Tsu08g01107	526	MobiDBLite	consensus disorder prediction	1	78	-	-
	Tsu08g01107	526	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 6	4	526	-	-
	Tsu08g01107	526	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	222	506	IPR027417	-
	Tsu08g01107	526	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	363	523	IPR001650	-
	Tsu08g01107	526	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	299	307	IPR000629	-
	Tsu08g01107	526	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	4	526	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g01107	Tsu-Chr8	12099877	12111317	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g01107	152	519	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.649	2.18e-94	291

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g01107	K12614		-	fve:101307921	849.736