Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01107 ATGatgaacaataacaacaatagaGCGAGATATCCACCACCTGGGATCGGTCCTGGACGTGGTGGTTCGAATCCCAATGTGAATCTGAACCAAAACCCAAACCAGAACCCTAATTTGAACCATCAGTTTCAACAAAGAGGACCTTATAATCACCATAaccagcaacaacaacaacagcaccAACAACAACAGAATCAGTaccagcagcagcagcaacaattCTATGCGCAGAGAGAAAGGCAGCAACAACAAAATCAGCAGatacagcagcagcagcagtgGTTGAGAAGGGCGCAGTTGGGTGGTTCCGAATCAAATGTTGTTGCTGATGAGGTTGAGAAGACCGTGCAATCGGAAGCTAGTGACCCGAGTTCTCAAGACTGGAAGGCAAGACTAAAGATTCCGCCAGCGGATACACGTTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACCGGCAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATCTTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATCTGAAAATCCAAGTTATGGTTACAACAGGTGGTACTAGTCTAAAAGATGACATAATGCGTTTATATCAACCGGTTCATTTACTGGTTGGAACCCCGGGAAGGATATTAGATCTTGCGAAGAAGGGTGTTTGCGTTCTTAAAGATTGCTCCATGCTTGTCATGGATGAGGCTGATAAGCTACTCTCTCCAGAGTTCCAGCCCTCAATTCAACAGCTGATTAATTTTCTCCCTACAAACCGTCAAATCCTGATGTTTTCAGCAACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTCACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTATTTTCCAAgCTGCAAATAAACCAGTCAATTATCTTCTGCAATTCAGTGAATCGGGTCGAACTTCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGCTTCTATATTCACGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAACTTTGATTTTCCCAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGACCGCTTTAATTTATATAGGATCGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGTCGGTGA 1581 0.389 MMNNNNNRARYPPPGIGPGRGGSNPNVNLNQNPNQNPNLNHQFQQRGPYNHHNQQQQQQHQQQQNQYQQQQQQFYAQRERQQQQNQQIQQQQQWLRRAQLGGSESNVVADEVEKTVQSEASDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLINFLPTNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR 526
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01107 526 MobiDBLite consensus disorder prediction 23 78 - -
Tsu08g01107 526 Gene3D - 111 356 IPR027417 -
Tsu08g01107 526 Coils Coil 53 98 - -
Tsu08g01107 526 CDD DEADc_DDX6 154 354 - -
Tsu08g01107 526 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Tsu08g01107 526 SMART helicmild6 403 484 IPR001650 -
Tsu08g01107 526 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 353 IPR014001 -
Tsu08g01107 526 Pfam Helicase conserved C-terminal domain 378 484 IPR001650 -
Tsu08g01107 526 Gene3D - 357 525 IPR027417 -
Tsu08g01107 526 SMART ultradead3 171 367 IPR014001 -
Tsu08g01107 526 Pfam DEAD/DEAH box helicase 177 341 IPR011545 GO:0003676|GO:0005524
Tsu08g01107 526 CDD SF2_C_DEAD 364 493 - -
Tsu08g01107 526 MobiDBLite consensus disorder prediction 1 78 - -
Tsu08g01107 526 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 4 526 - -
Tsu08g01107 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 506 IPR027417 -
Tsu08g01107 526 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 523 IPR001650 -
Tsu08g01107 526 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 299 307 IPR000629 -
Tsu08g01107 526 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 4 526 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu08g01107 Tsu-Chr8 12099877 12111317 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01107 152 519 Eukaryotic Initiation Factors Gene Family AT3G19760 38.649 2.18e-94 291
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01107 K12614 - fve:101307921 849.736