Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu08g01107 | ATGatgaacaataacaacaatagaGCGAGATATCCACCACCTGGGATCGGTCCTGGACGTGGTGGTTCGAATCCCAATGTGAATCTGAACCAAAACCCAAACCAGAACCCTAATTTGAACCATCAGTTTCAACAAAGAGGACCTTATAATCACCATAaccagcaacaacaacaacagcaccAACAACAACAGAATCAGTaccagcagcagcagcaacaattCTATGCGCAGAGAGAAAGGCAGCAACAACAAAATCAGCAGatacagcagcagcagcagtgGTTGAGAAGGGCGCAGTTGGGTGGTTCCGAATCAAATGTTGTTGCTGATGAGGTTGAGAAGACCGTGCAATCGGAAGCTAGTGACCCGAGTTCTCAAGACTGGAAGGCAAGACTAAAGATTCCGCCAGCGGATACACGTTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACCGGCAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATCTTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATCTGAAAATCCAAGTTATGGTTACAACAGGTGGTACTAGTCTAAAAGATGACATAATGCGTTTATATCAACCGGTTCATTTACTGGTTGGAACCCCGGGAAGGATATTAGATCTTGCGAAGAAGGGTGTTTGCGTTCTTAAAGATTGCTCCATGCTTGTCATGGATGAGGCTGATAAGCTACTCTCTCCAGAGTTCCAGCCCTCAATTCAACAGCTGATTAATTTTCTCCCTACAAACCGTCAAATCCTGATGTTTTCAGCAACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTCACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTATTTTCCAAgCTGCAAATAAACCAGTCAATTATCTTCTGCAATTCAGTGAATCGGGTCGAACTTCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGCTTCTATATTCACGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAACTTTGATTTTCCCAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGACCGCTTTAATTTATATAGGATCGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGTCGGTGA | 1581 | 0.389 | MMNNNNNRARYPPPGIGPGRGGSNPNVNLNQNPNQNPNLNHQFQQRGPYNHHNQQQQQQHQQQQNQYQQQQQQFYAQRERQQQQNQQIQQQQQWLRRAQLGGSESNVVADEVEKTVQSEASDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLINFLPTNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR | 526 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu08g01107 | 526 | MobiDBLite | consensus disorder prediction | 23 | 78 | - | - | |
Tsu08g01107 | 526 | Gene3D | - | 111 | 356 | IPR027417 | - | |
Tsu08g01107 | 526 | Coils | Coil | 53 | 98 | - | - | |
Tsu08g01107 | 526 | CDD | DEADc_DDX6 | 154 | 354 | - | - | |
Tsu08g01107 | 526 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 152 | 180 | IPR014014 | GO:0003724 | |
Tsu08g01107 | 526 | SMART | helicmild6 | 403 | 484 | IPR001650 | - | |
Tsu08g01107 | 526 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 183 | 353 | IPR014001 | - | |
Tsu08g01107 | 526 | Pfam | Helicase conserved C-terminal domain | 378 | 484 | IPR001650 | - | |
Tsu08g01107 | 526 | Gene3D | - | 357 | 525 | IPR027417 | - | |
Tsu08g01107 | 526 | SMART | ultradead3 | 171 | 367 | IPR014001 | - | |
Tsu08g01107 | 526 | Pfam | DEAD/DEAH box helicase | 177 | 341 | IPR011545 | GO:0003676|GO:0005524 | |
Tsu08g01107 | 526 | CDD | SF2_C_DEAD | 364 | 493 | - | - | |
Tsu08g01107 | 526 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
Tsu08g01107 | 526 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 | 4 | 526 | - | - | |
Tsu08g01107 | 526 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 222 | 506 | IPR027417 | - | |
Tsu08g01107 | 526 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 363 | 523 | IPR001650 | - | |
Tsu08g01107 | 526 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 299 | 307 | IPR000629 | - | |
Tsu08g01107 | 526 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 4 | 526 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu08g01107 | Tsu-Chr8 | 12099877 | 12111317 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu08g01107 | 152 | 519 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 38.649 | 2.18e-94 | 291 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu08g01107 | K12614 | - | fve:101307921 | 849.736 |