Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01101 ATGGATCGAGGCGACCAAATGGCTGCATTATCGGGTTCTGCATCGTACTTTATGCAGAGAGGATTACCTGGTTCTGGAAACCAACATGAATTGCATAGTCCACCCGGTATTCGTCAACTACCGAATACCAATTCACCATTTCAACCAAATATTGGTGGTACTATTGGATCCACATTGCCGATGGATTCTTCTGGAATTTCATCTCAATGTATCAATGTAGGTGCTCCTTCTGCTGCTGCTTCAACAGGTGAACCCGTCAAAAGGAAGCGAGGAAGGCCTAGAAAGTACGGGGCTGATGGAAATGTGTCGTTGGCGTTGACTCCAACAACACCGGCAAGTCAACCTGGATCTGTACCGCAAGTCCAGAAACGCGGTCGCGGACGCCCTCCAGGTTCAGGGAAGAAACAACAGTTGGCTTCTGTTGGTGGTTTGATCTCAAGTTCAGCTGGGAATGGTTTCACACCACATGTGATCAATGTCGCAATTGGAGAGGACATTGCGACAAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAGCTATATTTGTTATGACGGCCACTGGCGCTGTCTCTACTGTGACGCTTTGTCAAGCTTCGACATCTGGCGGATCTGTCACATATGAGGGGCGTTTTGAGATACTAAGCCTGTCAGGCTCTTACTTGGTTGCTGATAATGGTGGCTCCCGAAATCGAACTGGTTCATTAAGTGTTTCTCTTGCAAGTCCTGATGGTCGTGTCATTGGTGGAGGCGTTGGTGGACTGCTCATTGCTGCAAGTTCTGTTCAGGTGATACTTGGGAGCTTTATGTGGGGTGGACAAAAGACAAAGAACAAGAAGAATGAAGATTCGGAAGGTCACGAAGTTGGTATAGAGGcagatcatcatcatcatcagcaTGGAGTTCATAATTCAGTTGCAATGAACAACATTTCTTCACCAAATCAAAATCTTACTCCATCATCTCTCAATTCTTGGCCTGCATCGCGTTCCTTGGATATGCGTAATTCGCATATGGACATTGATTTAATGCGCGGGTGA 1038 0.4566 MDRGDQMAALSGSASYFMQRGLPGSGNQHELHSPPGIRQLPNTNSPFQPNIGGTIGSTLPMDSSGISSQCINVGAPSAAASTGEPVKRKRGRPRKYGADGNVSLALTPTTPASQPGSVPQVQKRGRGRPPGSGKKQQLASVGGLISSSAGNGFTPHVINVAIGEDIATKILAFSQQGPRAIFVMTATGAVSTVTLCQASTSGGSVTYEGRFEILSLSGSYLVADNGGSRNRTGSLSVSLASPDGRVIGGGVGGLLIAASSVQVILGSFMWGGQKTKNKKNEDSEGHEVGIEADHHHHQHGVHNSVAMNNISSPNQNLTPSSLNSWPASRSLDMRNSHMDIDLMRG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01101 345 Gene3D - 155 299 - -
Tsu08g01101 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 319 IPR039605 GO:0003680
Tsu08g01101 345 MobiDBLite consensus disorder prediction 37 76 - -
Tsu08g01101 345 MobiDBLite consensus disorder prediction 18 140 - -
Tsu08g01101 345 CDD DUF296 154 245 IPR005175 -
Tsu08g01101 345 MobiDBLite consensus disorder prediction 306 329 - -
Tsu08g01101 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 271 - -
Tsu08g01101 345 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Tsu08g01101 345 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Tsu08g01101 345 ProSiteProfiles PPC domain profile profile. 150 291 IPR005175 -
Tsu08g01101 345 MobiDBLite consensus disorder prediction 103 120 - -
Tsu08g01101 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 319 - -
Tsu08g01101 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01101 Tsu-Chr8 12035051 12038933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01101 1 345 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.829 1.07e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01101 - - gmx:100799791 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01101 08 12035051 12038933 Tsu08g01101 08 12035051 12038933 ECH