Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01073 ATGCAAAACTCTGAAGTTGGTCACTCATCTCATTTCAGATCTAAATCACATGATCAAGAGTTACTTCATCATAGAGGAAGATCTATGAGCTCAGTATCTGAAAGTGGAAGGAGCATAGAATCATCTGTTTCTTCTTCAGAATGGTTTTCAACTTCACAAAACAAGTCTGATAAAGAACCAAGTTGGAGTCCTTCACCTTCATCGGTTGAAACTGCATCATCGAACACAAATTTGATCTGTGATGGCAGTGAGAGTGTGTTGGACTTGAAGAGTTACCTGTCTAGTATCAAAGAGGAGGATCTTTATCATTCATCACCTCCTAGTGTGCTGCAGGATGGAGGAAGGGATGATAGTTTGTATGATCAACTTGAACAAGCTATGGCTGAGGCTGCGAAAGCTAGGTGGGATGCGTATCAAGAAACTGTTAGGCGTCGAAAAGCTGAAAAAGATCTCATGGATGTGATACGCAAGACTAAAGACAACAAAATCTTGTACGAAGAAGAGGTGAAACTACGGAAAGACTTAGAGGAAGCGCTAGAGAAAgcaaaagaagaaattgacaatgTGATAAGCCAAATAGAAAAAGTCAATAAGGAACTCGAACTTGCCTTGGATCACAAGTCATCACCAGAGAATCAAATTGGTGAGGCTGAGGCCTCAAGAACACAATCTCTTCAACTTTTGTCAGAGTTTTCTTTTTCGGAGATTGAAGAAGCAACATGTAACTTCAATCCATCGTTAAAGATCGGTGAAGGCGGATACGGAAGTATATTTAAAGGCATTCTTCGTCACACTGAAGTGGCTATAAAAATGTTGAACCCCGATAGCACTCAAGGACCCTCAGAGTTTCAACAAGAGGTTACGGTATTGAGCAAGTTAAGGCATCAAAATCTTGTCACACTTATAGGAGCAAACCAAGAATCAATGACTCTTATCTACGAGTATTTACCAAATGGAAGCCTCGAGGATCATCTCAGCTGCAACAACAGTAATACCTCTCCACTATCATGGCAGACTCGAATTCGCATCGCGACAGAACTATGTTCTGCACTCATTTTTCTCCATTCCAATAAACCTCACAGCATAGTGCATGGTGATCTAAAACCTTCCAACATTCTTCTTGATGCAAACTTCATAAGCAAGCTTAGCGACTTTGGAATCTGTCGTATATTATCTCGTCAAGACGATTCTTCAAGTAACAACAGTAGTACACAGTTTTGGATCACTAAATTTGCAAAAGGGACTTTTCCATACATGGATCCTGAATTCTTTGGTACAGGTGAACTTACTACAAAATCAGATGTTTATTCATTTGGAATTGTGTTATTGAGATTAATAACTGGAAAACCAGCATTAGGAATAAAGAATGAAGTGTTATATGCATTAAATAATGCCGGTGGAGAATTGAAATCACTTTTGGATCCTTTGGCCGGAGATTGGCCTATTGTGGAAGCCGAAAATTTGATTCATTTGGCTTTGAGGTGTTGTGatatgaataaaaagaaaaggccAGAACTTTGTTCAGATGTGTGGAAAGTTTTGGAACCAATGAGAGCTTCTTGTAGTGGCGCAATTGCAAACACTTTTGGTCTTAAgtcctgtttggataaacaacttaatagAACGACTTAA 1632 0.3787 MQNSEVGHSSHFRSKSHDQELLHHRGRSMSSVSESGRSIESSVSSSEWFSTSQNKSDKEPSWSPSPSSVETASSNTNLICDGSESVLDLKSYLSSIKEEDLYHSSPPSVLQDGGRDDSLYDQLEQAMAEAAKARWDAYQETVRRRKAEKDLMDVIRKTKDNKILYEEEVKLRKDLEEALEKAKEEIDNVISQIEKVNKELELALDHKSSPENQIGEAEASRTQSLQLLSEFSFSEIEEATCNFNPSLKIGEGGYGSIFKGILRHTEVAIKMLNPDSTQGPSEFQQEVTVLSKLRHQNLVTLIGANQESMTLIYEYLPNGSLEDHLSCNNSNTSPLSWQTRIRIATELCSALIFLHSNKPHSIVHGDLKPSNILLDANFISKLSDFGICRILSRQDDSSSNNSSTQFWITKFAKGTFPYMDPEFFGTGELTTKSDVYSFGIVLLRLITGKPALGIKNEVLYALNNAGGELKSLLDPLAGDWPIVEAENLIHLALRCCDMNKKKRPELCSDVWKVLEPMRASCSGAIANTFGLKSCLDKQLNRTT 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01073 543 PANTHER OS02G0152300 PROTEIN 1 202 - -
Tsu08g01073 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Tsu08g01073 543 ProSiteProfiles Protein kinase domain profile. 243 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01073 543 MobiDBLite consensus disorder prediction 1 77 - -
Tsu08g01073 543 MobiDBLite consensus disorder prediction 10 27 - -
Tsu08g01073 543 PANTHER U-BOX KINASE FAMILY PROTEIN 1 202 - -
Tsu08g01073 543 PANTHER U-BOX KINASE FAMILY PROTEIN 215 525 - -
Tsu08g01073 543 SMART serkin_6 243 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01073 543 ProSitePatterns Protein kinases ATP-binding region signature. 249 270 IPR017441 GO:0005524
Tsu08g01073 543 Gene3D Transferase(Phosphotransferase) domain 1 316 524 - -
Tsu08g01073 543 SUPERFAMILY Protein kinase-like (PK-like) 224 515 IPR011009 -
Tsu08g01073 543 PANTHER OS02G0152300 PROTEIN 215 525 - -
Tsu08g01073 543 Gene3D Phosphorylase Kinase; domain 1 213 315 - -
Tsu08g01073 543 MobiDBLite consensus disorder prediction 28 77 - -
Tsu08g01073 543 Coils Coil 161 206 - -
Tsu08g01073 543 Pfam Protein kinase domain 247 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01073 Tsu-Chr8 11754902 11757896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01073 114 530 U-box Gene Family AT2G45910 50.756 3.67e-152 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu08g01073 Pkinase 3.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01073 - - mtr:MTR_8g030690 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01073 08 11754902 11757896 Tsu08g01073 08 11754902 11757896 ECH