Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01069 ATGGCGGATAGTGCGGTTTCATTCCTTTTGGGACACTTATCCCAATTGCTTCAACATGAAGCTAACTTGTTGTCTGGAGTGGAAGACAAAATCGAATCCCTCCGAAACGAACTTGAAATCATAAACGCCTACCTCAAAACTTCCTCTAAAGggaacaagaacaacaacaaggAAATAGAACAAATAGTTTTGAGTCAGATCAGAGATGCCGCCCACCTAGCTGAGGATGTCATCGACACATTCATTGCCAACCTCGCCATCTACAAGAGGAGAAACATGCTAGGAAAAATGTTTCAATACATTGATCGCTCAAAGTTGCTCCGCGAAGTAGCAGAGAAAATTGACAAGATCAAAACCACACTCAAAGAGATACATGAAAACAACATCAAATACAATCAAGAAAGCAGTAATCAATCAATATCAGCAACAGAAGAGGAAGAGAGGAAACAATCACTGCAAAGATTAAGAAGAAATGTGGAGGTGGAAAATGTAGTGGGATTTGTCCATGAATCTGATGTAGTCATCAATAGACTCATAGAGGGTGATTCGCCGCATCTCAACGTCCTTTCAATCATTGGTATGGGTGGATTGGGAAAAACAACTCTTGCAAGAAAGATCTACAACAGTGACAAGGTGAAGAAACACTTCGATTTCCGCGCTTGGGTTTATGTTTCGAACGAGTGTAAAACTAGGGAACTTTTGCTTGGCCTTCATCAAAATTTGATGCCAAACGATggcaaaaaattcaaaaagaatGGTAAGAAGAAGCTCGACATCTCTAGCTTAAGTGATGATGAGCTTAAGAAAAGAGTGTGGGAATTCTTGAAGTTGAAAAAATATCTGCTGATTCTTGATGACTTGTGGAAAATACAAGATTGGGATGAGATCAAAGATGCTTTTCCTGATGAAAAAAGAGGGAGCAGAATACTAATAACTAGTCGTTTGAAAGAAGTTGCTTCGCATACTGGTCGAGATCCTCCTTACTACCTTCAATTTCTCAATGAAGAACGTAGTTGGGAGCTCTTCTCCAAAAAAGTCTTTAGAGGAGAAGAGTGTCCTTTTGATCTTGAATCTCTTGGTAAACAAATCGTTAGAAGTTGTGGCGGTTTACCACTTTCAATTGTGGTGCTTGCAGGACTTCTAGCAAACAAAGAAAAGTCACACAGAGAATGGTCTAAAGTCAAGGATCATGTTAACTGGTATCTTACTCGAGACGACGAGACTAAAGTCAAGGATATAGTGCTTAAACTCAGTTTCGACGACTTGCCTTCAAGATTAAAACCATGTTTTCTGTATCTAGGGATATTCCCAGAAGATTCTGAAATGCATGTAAGGCGATTGTTGCAGCTATGGGTCGCTGAAGGATTTTTACAAGAAACTGGTAGCAGAGATGCATATGATGTTGCTGAAGACTACCTTTATGAGCTCATTGATCGTAGTTTGATCCAAGTAGCACGAGTGGAAGATATTGAAGGTGTGCAAACATGTCGCATCCACGATCTTCTTAGAGATCTCTGCATATTAGAGAGCAAAGAGTACAAGATCTTTGAAGTTTGTACAAAGACCAATATTTTAATCCCTACAAAACCTCGTAGATTGTCTGTCCATTCTGAAATGTCTCACTATTTTTCTTCAAGTACCAAAAACCATTCATGTGTCCGTTCTTTGTTTTTCTCTGACCCAAACTGCTTCGTTGCTAAGTGGAAACGGCTTACCAAAGACTTCAAGTTGGTTCGGGTATTGGATTTTGAGGGAAGGTATTGTTTTAAGATTCCTTCCAATTTAGGGAACTTTATTCACTTGAGGTACTTAAGAATAGGCTCAGAAGATATACGCAGCATTCCAGATTCTATATGCAACCTTCAAAATCTACAAACATTATGCTTTGAACCGTCAACTCTATGCAACTTTTTTTGCAACCCAATTTCATTTCCATATGGAATAATAAAGCTCAAGCATCTAACACATGTGTATAGTTATAGACCAATCAAGCTACGCAGCAGCAGTTCCCAATCAGATGGTGAAGTTATGTGGCATCTTCAAACAATTGGTTTCATTGGGCTTGACAAAAGAACAACATATCTCATAGAGAAAGGAAGTTTCCCGAAACTAAGAACATTACGATTGCAGATCTCCAAGAAATTCAAAGGCGATGTGCCTAAAATGTTGTTAAGCCTACAACAGTTGAAGCATTTGAATAAGCTAGAAATCTTCACAGGTTGGTTTCCAATATTGATGTTAGGACTGTTTTCCCATCCATCTCTAAGTTTTGATGTTAATTTTATTCAAGATGGATTCCCACAGTTGCAGGAGTTTCAGATGATAGATTTGCCTATTAGAAACTGGAAATTAGCCAATGGTTCGATGCCAAGACTTCAAATCCTCATTGTTCACAACTGTGGTATGTTGGATAGCCTCCCAAGTGAATTGTGGTCTTTAACTACTTTAAGAAAAGTTTGTGTTCAGAAACCCTCTGATGCAATGGCTGTAATGTTACAAAATTTGAAAGTTAATAATGGATGTGAACTCATCATGATGATGGCTAAGATGGGAAACGTCTTGCAACCAGGGCAAGGACTCGCCATCGAAGAAGTGCATCCAAACCTTGAAGGTTGA 2616 0.3842 MADSAVSFLLGHLSQLLQHEANLLSGVEDKIESLRNELEIINAYLKTSSKGNKNNNKEIEQIVLSQIRDAAHLAEDVIDTFIANLAIYKRRNMLGKMFQYIDRSKLLREVAEKIDKIKTTLKEIHENNIKYNQESSNQSISATEEEERKQSLQRLRRNVEVENVVGFVHESDVVINRLIEGDSPHLNVLSIIGMGGLGKTTLARKIYNSDKVKKHFDFRAWVYVSNECKTRELLLGLHQNLMPNDGKKFKKNGKKKLDISSLSDDELKKRVWEFLKLKKYLLILDDLWKIQDWDEIKDAFPDEKRGSRILITSRLKEVASHTGRDPPYYLQFLNEERSWELFSKKVFRGEECPFDLESLGKQIVRSCGGLPLSIVVLAGLLANKEKSHREWSKVKDHVNWYLTRDDETKVKDIVLKLSFDDLPSRLKPCFLYLGIFPEDSEMHVRRLLQLWVAEGFLQETGSRDAYDVAEDYLYELIDRSLIQVARVEDIEGVQTCRIHDLLRDLCILESKEYKIFEVCTKTNILIPTKPRRLSVHSEMSHYFSSSTKNHSCVRSLFFSDPNCFVAKWKRLTKDFKLVRVLDFEGRYCFKIPSNLGNFIHLRYLRIGSEDIRSIPDSICNLQNLQTLCFEPSTLCNFFCNPISFPYGIIKLKHLTHVYSYRPIKLRSSSSQSDGEVMWHLQTIGFIGLDKRTTYLIEKGSFPKLRTLRLQISKKFKGDVPKMLLSLQQLKHLNKLEIFTGWFPILMLGLFSHPSLSFDVNFIQDGFPQLQEFQMIDLPIRNWKLANGSMPRLQILIVHNCGMLDSLPSELWSLTTLRKVCVQKPSDAMAVMLQNLKVNNGCELIMMMAKMGNVLQPGQGLAIEEVHPNLEG 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01069 871 CDD RX-CC_like 2 124 IPR038005 -
Tsu08g01069 871 Coils Coil 142 162 - -
Tsu08g01069 871 Gene3D - 332 418 IPR042197 -
Tsu08g01069 871 PANTHER DISEASE RESISTANCE PROTEIN RP 47 845 IPR044974 GO:0006952
Tsu08g01069 871 Gene3D - 4 105 - -
Tsu08g01069 871 PANTHER - 47 845 - -
Tsu08g01069 871 PRINTS Disease resistance protein signature 188 203 - -
Tsu08g01069 871 PRINTS Disease resistance protein signature 367 381 - -
Tsu08g01069 871 PRINTS Disease resistance protein signature 787 803 - -
Tsu08g01069 871 PRINTS Disease resistance protein signature 274 288 - -
Tsu08g01069 871 Gene3D - 144 325 IPR027417 -
Tsu08g01069 871 Gene3D Ribonuclease Inhibitor 513 852 IPR032675 -
Tsu08g01069 871 Pfam NB-ARC domain 172 420 IPR002182 GO:0043531
Tsu08g01069 871 SUPERFAMILY L domain-like 497 821 - -
Tsu08g01069 871 Pfam Rx N-terminal domain 5 84 IPR041118 -
Tsu08g01069 871 Coils Coil 107 134 - -
Tsu08g01069 871 Gene3D - 419 508 IPR036388 -
Tsu08g01069 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 433 IPR027417 -
Tsu08g01069 871 Coils Coil 17 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01069 Tsu-Chr8 11733544 11736977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01069 175 505 WRKY Transcription Factor Family AT5G45050 22.289 1.20e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01069 - - gmx:100814688 879.011