Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01061 ATGCAATCTGGTGGTGGTGGACCTGGCCGGACGGCAGGGCGGGCGTCGACTTCGTCGGCAGCTGCTTCGCCGTCTTCTTCGTCTTCGGCATCACAGTTAGGTTTTGAATCTTTGCAGCAACAGCAACAACATCAGcagcaacagcagcagcagcagatAGGTTCTAGACAGTCATTTCAACAGCAACTGCTTAGAAAACCCGAAGGGAATGAAGCATTTTTAGCTTATCAAGCAGGGCGTCAAGGTTCATTTGGGAGTAACAACTTCTCACCTCCTAATGCTATGCAAATGCCCCAGCAGTCTCAAAAGTTCATGGGTTTAGGTCAACATGGTTCCAACCAAGATGCCCAGCTCAGAGGTCAAGGTAGCGAGCAGCAGCAAATGCTAAATCCTGTGCACCAAGCATACCTTCAATATGCTTTCCAGGCTGCGCAACAAAAGCAGCCTGCTTTGGGGATTCATCCGCAGCAGCAAACTAAGATGGGAATGTTAAACACTGCATCTGTAAAAGATCAGGAAATGCGTATGGGGAATCTGAAAATGCAGGACATTATGTCAATGCAGGCAATGAATCAAGCTCAAGGATCGTCTTCTAGGAGTTCATCTGAACATGTTTCCCGTGGAGAAAAGCCGATGGAGCAAGGACAGCAGATAAGACCTATTCAAGCACCGGAAGCACAACACGGCAACCAAAATGTAATGAACAGCCAGATTGCAATAGCTGCTCAATTGCAGGCCATGCAGGCATGGGCACGTGAAAATAATATCGATTTATCACATCCTACGAATGCAAATTTAATGGCAAAGCTCATTCCAATGATGCAGTCAAGGATGGTCATACAACCACCAAAGGCCACCGAGAGCAACATTGGTGCACATTCGTCACCTGTCCCTGTTTCGAAGCAGCAAGTTAATTCTCCAGCAGTTGCAAGTGAGAGCTCAGCACATGCTAATTCATCAAGTGACGTGTCTGGACAGTCGGGTTCTTCGAAAGCCAGACATACTGTTCCCCCCAGCCATCTTGGCTCAACAACAAATCCTTGTCACTCCAGTGACATGACCATGCAGCAAATCAATGTTCATGGTAGAGAGTCTCAAGCTCCTCCAAGGCAACAAGTAAAACCTGGAAATGGAACGCCTTCTATGCATTCTCAGCAATCTTCTGCCACCATGAACTTAGGTGCAGCAGATCACCCTTTGAATGCAAAAGGTTCATCTTCTGGTGCAGAACCTCCTCAAATGCAGTATATCAGGCAGTCAAACCAATCTACTACTCAGGCTGGAGGTCCAACTAAAGAAGGGGGTTCGGGAAATTATGCTAAATCTCAAGCGGCACCAGCTCAGACACCTGAGCGGCAAAGTGCATTTACCAAACAACAGCTACATGTTCTTAAAGCCCAGATACTAGCATTTAGGCGGATAAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTTCTTCAAGCTATCACTCCACCGCCTCTTGAGATGCAGGCAAAACAACCAAACCATCCCGCAGGAGGACAAAATCAAGTCAAATCTGCTGGAAATATTGTTGTAGAACAACCACGGCATGCTGAGGCCAATGCCAAAGAATCACAATCTATTTCTGCTGTTAATGGCCACAGTTCTGTAAAGCAGGAATCCTTTTCAAGAGATGACAAATCTGCTCCACCACCAGTTCATATTCAAGCTGTTATGCCATCTATATCAAAGGACTCTGCTCCGACATCATCTGCAGGAAAGGAAGAGCCAAAAACAATTGGATCCTCTTTGAAGCAAAAGCAGGACAGCGAACATGGAAATAACATTACTCCTGTTAGAAACGAGTCGGCATTAGATAGGGGAAAGGCTATTGTATCACAGGCCCCTGTATCTGACACactacaaattacaaaacctgCACAAGCAAACAGTGTTTCCCAGCCAAAGGATGTAGGACCGACCAGAAAATATCATGGACCCCTGTTTGATTTTCCTTTCTTCACTAGGAAACATGACTCTTTTGGGTCATCAATGATGGTAAACAACAGCAATAATTTATCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGTGCAGAAGTACTTAGCAAGAAGCGGACAGAAAATTTAAAGAAGATTGAAGGTTTGCTGTCTGTGAACTTGGAGAGGAAACGAATTAGACCTGACCTTGTGTTGAGACTgcaaattgaagagaaaaagcTTCGCCTCTTAGATGTTCAGGCACGTTTGAGGGATGAgattgatcaacagcaacaagaGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGCTGTGTGAACGTCAGCGTGTGGAACTTGTTAGACAAGTGCAGGCATCTCAGAGAGCTGCAAGGGAGAAGCAACtcaaatctatatttttatggCGTAAGAAACTTCTCGAGGCGCACTGGGCAATTCGTGATGCCCGTACTGCCCGCAACAGGGGGGTGGGTAAATATCATGAGAGGATGTTGCGGGAATTCTCAAAACGTAAAGATGACGATCGAAGCAAAAGGTTGGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATTCCGGGTGATGCAGCAGAGAGATATGCTGTTCTTTCATCCTTCTTAAGCCAGACGGAAGAGTATCTACATAAATTAGGAAGCAAGATAACAGCTGCCAAAAATCAACAGGAAGTAGAAGAGGCAGCAAAATCAGCTGCAGATGCTGCACGATTGCAGgGTCTTTCTGAAGAAGAAGTCAGAGCTGCCGCTGCTTGTGCCGGAGAGGAAGTGATGATTAGGAATCGTTTTATGGAGATGAATGCTCCTAGAGACAGTTCATCCGTCAACAAGTATTACAACCTCGCACATGCGGTGAATGAAATGGTCATCAGACCACCATCTCTATTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGACTGCAATGGATGCTGTCTTTgtacaacaacaaattaaacgGAATTTTGGCAGACGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGCCCACATCTCATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTATATAAATGGTTACCATCtgtgtcatgcattttttaTGCTGGAGGGAAGGATTATCGAACAAAATTATTTCATCAAGTTTCTGCTCTGAAGTTTAATGTTTTGGTGACTACTTATGAGTTCATCATGTATGACCGGgcaaaactttcaaaaattgATTGGAAGTATATCGTGATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTTTAGCACGTGATCTTGATAGGTATCGTTGTCAACGACGCCTGCTTTTGACAGGAACACCGTTgcagAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATAAGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTCCTACTCAAAATGCAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTCATCACAATCCATCGACTTCATCAGATTCTCGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTACCGCCAAAGGACTCGATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTATGATTGGGTCAAATCAACCGGTACTCTTCGTCTTGATCCCGAGGATGAGGAACGTAAGCTTCAGAGGAATCCTAACTACCCGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGGAAAACTTGCAACCATCCGTTGCTTAATTACCCATTCTTCAGTGACTTATCTAAAGAATTCATTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACTGGACACCGAGTTCTACTTTTCAGTACTATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTGGTGTACAGAAGAATTGATGGAACAACTAGTTTGGAAGACCGTGAATCAGCTATAAATGACTTCAATTCCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGATACAGTTGTTATTTATGATCCTgatccaaaccctaaaaatgaGGAGCAGGCTGTTGCCAGAGCTCATCGCATTGGACAGAAAAGACCAGTCAAGGTTATCTACATGGAAGCAGTTGTCGACAAAATCCCAAGTCATCAGAAGGAGGATGAAATGAGAGGTGGAGGCACTGTTGATCTGGATGATGAACTTGTAGGCAAGGATCGCTACATAGGATCTATTGAGGGCCTCATAAGGAACAATATTCAGCAATATAAGATAGATATGGCTGATGAGGTAATTAATGCGGGACGTTTCGATCAAAGAACAACGCATGAAGAAAGGCGGTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCATCATTGCAGGAGGTAAATCGCATGATTGCTAGGAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGATGATGAACTGGATTGGATTGACGAGATGACGCGTTACGATCATATCCCTAAATGGATTCGTGCCAATACAAAAGAAGTTAATGCTGCTATTGCTGCTTTATCAAAAAGACCATTAAAGAAAGCTTTATTGGGTGGCAGTGTTGGCGTGGAAACAAGTGAACTTGGTTCAGAAAGGAAAAGAGGGAGACCCAAAAAGCATACTAGTTATAAAGAGCTGGAAGATGAAGATTTGGAATACTCTGAAGCAAGCTCTGAAGAAAGAAATGGATATGCAAATGAAGAAGGGGAAATAGGAGATTTCGAAGATGATGGGTATAGTGGAGCTGATGGAGCTCAGCCCATTGCTAAAGATCAGATGGAAGATGGTAGATATGAATTTCCTCCAACTTTAGAAATTGCCAGTAATCAGGTGGTTCAAGAAGCTGGTTCCTCTGGCTCGGGGTCATCCGCAGAGTGTCAAAAATTGAAACAGATAGTATCACCATCAATTTCCTCTCAGAAATTTGGTTCCCTGTCTGCATTAGATGCCCGACCAGGTTCTGTTTCAAAAAGGATGACAGATGAGTTGGAGGAAGGGGAAATTGCAGGATCCGTTGATTCCCACATGGAGCATCAGCAGTCTGAAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTCTGCAGAAACCAAAGATTAAACGCAAACGTAGTCTTCGTGTTCGACCCCGTCATGCCACTGAAAGACCTGAAGAAAAGTCTGGTAGTGAAATGACACCTCGTTTGTCAGTTCTAGCAGACCGTAAATATCAAGCACAGTTGAGGACTGACCTAGAATCAAAATCACACGTAGATTCCAATGCCAGCAGGAATGATCAAAAttcttctataaaaaataaGCGAACTTTACCTTCAAGGAGGGTTGCTAATGCATCCAAATTACATGGCTCACCAAAGCCTACTCGTTTGAATAGCATATCTGCTCCTTCAGAGGATGGTGGTGAATATTCCAGGGAAAGCTGGGAGGGGAAGCCTATTAATTCAAGTGGATCTTCTGCTCATGTCTCTAGGATGACAGAAATCATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGGATAGACAAGGAAGGCCAACAAATTGTACCTCTCTTAACAGATTTGTGGAAGAGGATTGAGAATTCTGGCTACAGTGGTGGATCTGGGAATAGTCTGTTGGATTTACGAAAGATTGATCAGCGGATTGATAAATTGGAGTATAATGGAGCAACAGATCTTGTATTTGATGTGCAGCTCATGTTAAAGAGTGCGATGCATTATTATGGTTTTTCCCTTGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTCGATATATTGAAAATTGCATTTCCGATACCGACTTCCGAGACGCAAAAAGTGCACTCTCTTTCACTGGTCCAATTTCTGCCACCACCAATGTATCGTCTCCAAGGCAAGTGGCTGTCGGCCAAAGCAAGCGGCACAGGCTGA 6159 0.4225 MQSGGGGPGRTAGRASTSSAAASPSSSSSASQLGFESLQQQQQHQQQQQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAGRQGSFGSNNFSPPNAMQMPQQSQKFMGLGQHGSNQDAQLRGQGSEQQQMLNPVHQAYLQYAFQAAQQKQPALGIHPQQQTKMGMLNTASVKDQEMRMGNLKMQDIMSMQAMNQAQGSSSRSSSEHVSRGEKPMEQGQQIRPIQAPEAQHGNQNVMNSQIAIAAQLQAMQAWARENNIDLSHPTNANLMAKLIPMMQSRMVIQPPKATESNIGAHSSPVPVSKQQVNSPAVASESSAHANSSSDVSGQSGSSKARHTVPPSHLGSTTNPCHSSDMTMQQINVHGRESQAPPRQQVKPGNGTPSMHSQQSSATMNLGAADHPLNAKGSSSGAEPPQMQYIRQSNQSTTQAGGPTKEGGSGNYAKSQAAPAQTPERQSAFTKQQLHVLKAQILAFRRIKKGEGTLPQELLQAITPPPLEMQAKQPNHPAGGQNQVKSAGNIVVEQPRHAEANAKESQSISAVNGHSSVKQESFSRDDKSAPPPVHIQAVMPSISKDSAPTSSAGKEEPKTIGSSLKQKQDSEHGNNITPVRNESALDRGKAIVSQAPVSDTLQITKPAQANSVSQPKDVGPTRKYHGPLFDFPFFTRKHDSFGSSMMVNNSNNLSLAYDVKDLLFEEGAEVLSKKRTENLKKIEGLLSVNLERKRIRPDLVLRLQIEEKKLRLLDVQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRVELVRQVQASQRAAREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVGKYHERMLREFSKRKDDDRSKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSSFLSQTEEYLHKLGSKITAAKNQQEVEEAAKSAADAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPRDSSSVNKYYNLAHAVNEMVIRPPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVSCIFYAGGKDYRTKLFHQVSALKFNVLVTTYEFIMYDRAKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGPTQNAEDDWLETEKKVITIHRLHQILEPFMLRRRVEDVEGSLPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKLQRNPNYPVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEDEMRGGGTVDLDDELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDEMTRYDHIPKWIRANTKEVNAAIAALSKRPLKKALLGGSVGVETSELGSERKRGRPKKHTSYKELEDEDLEYSEASSEERNGYANEEGEIGDFEDDGYSGADGAQPIAKDQMEDGRYEFPPTLEIASNQVVQEAGSSGSGSSAECQKLKQIVSPSISSQKFGSLSALDARPGSVSKRMTDELEEGEIAGSVDSHMEHQQSESWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERPEEKSGSEMTPRLSVLADRKYQAQLRTDLESKSHVDSNASRNDQNSSIKNKRTLPSRRVANASKLHGSPKPTRLNSISAPSEDGGEYSRESWEGKPINSSGSSAHVSRMTEIIQRRCKNVISKLQRRIDKEGQQIVPLLTDLWKRIENSGYSGGSGNSLLDLRKIDQRIDKLEYNGATDLVFDVQLMLKSAMHYYGFSLEVRTEARKVHDLFFDILKIAFPIPTSETQKVHSLSLVQFLPPPMYRLQGKWLSAKASGTG 2052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 528 545 - -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 1 62 - -
Tsu08g01061 2052 Pfam SNF2-related domain 985 1288 IPR000330 GO:0005524|GO:0140658
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 419 455 - -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 189 217 - -
Tsu08g01061 2052 SUPERFAMILY Bromodomain 1954 2022 IPR036427 GO:0005515
Tsu08g01061 2052 Coils Coil 1528 1548 - -
Tsu08g01061 2052 SMART QLQ_2 454 491 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 1602 1622 - -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 1742 1807 - -
Tsu08g01061 2052 SMART helicmild6 1338 1422 IPR001650 -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 1831 1850 - -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 283 390 - -
Tsu08g01061 2052 Pfam Helicase conserved C-terminal domain 1311 1422 IPR001650 -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 1861 1875 - -
Tsu08g01061 2052 ProSiteProfiles QLQ domain profile. 455 491 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu08g01061 2052 CDD Bromodomain 1954 2009 - -
Tsu08g01061 2052 CDD SF2_C_SNF 1301 1432 - -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 105 126 - -
Tsu08g01061 2052 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1312 1489 IPR001650 -
Tsu08g01061 2052 Gene3D - 1901 2024 IPR036427 GO:0005515
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 569 606 - -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 1821 1896 - -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 1598 1662 - -
Tsu08g01061 2052 Pfam QLQ 455 489 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu08g01061 2052 Gene3D - 1221 1431 IPR027417 -
Tsu08g01061 2052 Gene3D - 974 1220 IPR038718 -
Tsu08g01061 2052 PANTHER ATP-DEPENDENT HELICASE BRM 30 2016 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Tsu08g01061 2052 Coils Coil 736 756 - -
Tsu08g01061 2052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1215 1552 IPR027417 -
Tsu08g01061 2052 SMART ultradead3 978 1166 IPR014001 -
Tsu08g01061 2052 SMART bromo_6 1899 2014 IPR001487 GO:0005515
Tsu08g01061 2052 PANTHER SNF2/RAD54 HELICASE FAMILY 30 2016 - -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 1754 1776 - -
Tsu08g01061 2052 MobiDBLite consensus disorder prediction 525 606 - -
Tsu08g01061 2052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 994 1158 IPR014001 -
Tsu08g01061 2052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 966 1211 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01061 Tsu-Chr8 11613861 11625725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01061 1003 1447 RAD5 or RAD16-like Gene Family AT1G02670 26.104 3.79e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu08g01061 SNF2_N 9.5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01061 - - gmx:100807104 3132.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01061 08 11613861 11625725 Tsu08g01061 08 11613861 11625725 ECH