Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01057 atGCTTCAAACGAAGCTTTTAGAAAATGGTAACTTGATTCTTGTTAATCAAAACGGTGTCGTTTTATGGCAAAGTTTTGATGAACCAACTGACACGTGGCTACCAGGTATGAATCTAACTAGGGTTCATAATTTACTTTCATGGAAGACTTTAACAAACCCTAGTAACGGTTTTTACTCATTAAGGTTGACACCACCGAATTATGGTCAATTTGAGTTAGTTTTCAATGAAACTGTTTCTTATTGGTCTACTGGTAATTGGACTGGTGGATCATTTAGTGATGTACCTGAGATGATGATTCCATATCTTTATCGGTTTGATTTTAAAGACGCGTTTTTGCCGACTGCGTCGTTTGGATTCTCCGAACGGGCGATGGATAATGGTGTTAGGCCGCCTACGATGTTTCGTGTTGAGCCATTTGGTCAGATTCGGCAGTATACTTGGTCGAATCAGGCTGGTTCGTGGAATATGTTTTGGTCGAGACCTGAATCGATTTGTTCGGTTCGGGGTGTTTGTGGGAGGTTTGGTGTTTGTACAGGCGATATGTCGAGGGTTTGTGAGTGTGTTAAAGGTTTTGTGGCAGTTGACGGTGGTGGTTGGGATTCTGGTGATTATTCGGAAGGTTGTTGGAGAGGGGAGAGGGTTTGTGATGAAAATGATGGTTTTGAAGATTTGGGTGTTGTTAGGTTTGGTTTTGGTAATGTGAGTACTTTTAAGGCTAAATCTAGAAGTTTGTGTGAGAGTAGTTGTTTGGGTTCTTGTGATTGTGTTGGTTTGTCTTTCGATGAAAAGAATGGCTTTTGTAAGAATTATTTTGGGTCTCTTTttgattttcaaaatttaaccaCTTTAGAGAGTGGTGGTGGCGGTGGTAATGGGAATGTGTTGTATGTTAGGGTTCCTGGCGGCGGGGGTGAGGGGAAGATTAAGAGGTTGAGTGGTAAGGTTTTGAGTGGCATTGTAATtgggtgtattttgtttttggttttcgGTGTGGTGGTGGTGACTTTGGTGGTGTTGATAAAGAGGAAGAGATTGAAGAAAGAGAAGGAGAATGGGTTTGTtcctattttgaatttgaaggtGTTTTCTTACAAGGAGCTTCAATTGGCGACTCGAGGGTTTTCTGAGAAAGTTGGGCATGGCGGGTTTGGGACGGTGTTTAAAGGGGAGTTGAATGATTCTACGATTGTTGCGGTGAAGCGTTTGGAGAGGCCGGGAGGTGGGGAGAAAGAGTTTAGGGCCGAGGTTTCAACGATTGGGAACATTCACCATGTTAATCTTATGCGGCTAAGAGGTTTTTGCTCTGAAAATGCGCATCGACTTTTGGTTTATGAGTACATGCCGAATGGTGCTCTTAGCGGTTATCTGCGAAAGGATGGGCCGTGTTTGAGTTGGGATGTTAGGTTCAGAGTGGCGATTGGAACTGCTAAAGGCATTGCGTATTTACACGAGGAATGTAGAAGTTGCATTATACATTGTGATATCAAACCTGAAAACATTCTTTTGGATGGTGATTTCACTGCCAAGGTTTCTGATTTTGGATTGGCAAAGCTAATTGGCAGGGACTTCAGTAGGGTGTTGGCAACCATGAGGGGTACTTGGGGATATGTAGCACCGGAGTGGATTTCTGGCGTTGAAATTACAACTAAAGCTGATGTTTACAGCTATGGAATGACATTGCTAGAACTCGTAAGTGGTCGCCGGAATGTGGAGGCACCACCTTTGTCTGGTGATAGAAAGAGTGGTTGTGAGACAGAGGAGAAATGGTTCTTTCCTCCGTGGGCAGCACAACTGATAATCGAGGATAATATGGCTGCTGTGGTTGATAAGAAGCTTGGAGATGTATATAACATTGAGGAGGCCAAGAGAGTTGCGTTGGTAGCAGTTTGGTGCATTCAGGATGATGAGGCAATGAGACCTACCATGGGTATGGTGGTGAAAATGTTAGAAGGGTTAGTGGAGGTGGCTATTCCACCGCCGCCTAAGTTGCTACAAGCGTTGGTTACCGGAGAATCCTTTCATGGTGTCAAGGCTGATTCGAGTAATGCAGTTTCTACTTTTGGCAGTTCTTCTGGTTACGACAACATGGAAGTGTCGGCTGCTGATTCAGAATCATGTACAGGAGATGTTTTTTCACCATTGGATTGCATTGTCAATATTCGATAA 2169 0.4242 MLQTKLLENGNLILVNQNGVVLWQSFDEPTDTWLPGMNLTRVHNLLSWKTLTNPSNGFYSLRLTPPNYGQFELVFNETVSYWSTGNWTGGSFSDVPEMMIPYLYRFDFKDAFLPTASFGFSERAMDNGVRPPTMFRVEPFGQIRQYTWSNQAGSWNMFWSRPESICSVRGVCGRFGVCTGDMSRVCECVKGFVAVDGGGWDSGDYSEGCWRGERVCDENDGFEDLGVVRFGFGNVSTFKAKSRSLCESSCLGSCDCVGLSFDEKNGFCKNYFGSLFDFQNLTTLESGGGGGNGNVLYVRVPGGGGEGKIKRLSGKVLSGIVIGCILFLVFGVVVVTLVVLIKRKRLKKEKENGFVPILNLKVFSYKELQLATRGFSEKVGHGGFGTVFKGELNDSTIVAVKRLERPGGGEKEFRAEVSTIGNIHHVNLMRLRGFCSENAHRLLVYEYMPNGALSGYLRKDGPCLSWDVRFRVAIGTAKGIAYLHEECRSCIIHCDIKPENILLDGDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVEITTKADVYSYGMTLLELVSGRRNVEAPPLSGDRKSGCETEEKWFFPPWAAQLIIEDNMAAVVDKKLGDVYNIEEAKRVALVAVWCIQDDEAMRPTMGMVVKMLEGLVEVAIPPPPKLLQALVTGESFHGVKADSSNAVSTFGSSSGYDNMEVSAADSESCTGDVFSPLDCIVNIR 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01057 722 SUPERFAMILY Protein kinase-like (PK-like) 355 651 IPR011009 -
Tsu08g01057 722 SUPERFAMILY alpha-D-mannose-specific plant lectins 5 54 IPR036426 -
Tsu08g01057 722 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-2 3 710 - -
Tsu08g01057 722 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 3 710 - -
Tsu08g01057 722 ProSitePatterns Protein kinases ATP-binding region signature. 379 401 IPR017441 GO:0005524
Tsu08g01057 722 ProSiteProfiles PAN/Apple domain profile. 216 282 IPR003609 -
Tsu08g01057 722 ProSiteProfiles Protein kinase domain profile. 373 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01057 722 SMART serkin_6 373 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01057 722 Gene3D Transferase(Phosphotransferase) domain 1 448 657 - -
Tsu08g01057 722 Pfam D-mannose binding lectin 4 42 IPR001480 -
Tsu08g01057 722 Gene3D Phosphorylase Kinase; domain 1 337 447 - -
Tsu08g01057 722 Pfam S-locus glycoprotein domain 82 194 IPR000858 GO:0048544
Tsu08g01057 722 Pfam Protein kinase domain 376 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01057 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Tsu08g01057 722 CDD STKc_IRAK 379 653 - -
Tsu08g01057 722 PIRSF SRK 2 705 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01057 Tsu-Chr8 11564460 11567230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01057 363 660 Receptor kinase-like Gene Family AT5G20050 46.302 4.65e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu08g01057 Pkinase 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01057 - - lja:Lj0g3v0252549.1 1112.06