Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01055 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCATGGAACTCCGGTGTATTACTATTGTCCACCGATTTTAGAAGAGCGCGGCGCTTTAACCTCTACTGATGGTGCGACCGATTCACTCACTGCTGGATTGCTGGTAGGCTTGAACGTGGAAGAATCCACACCTGATACTTACCAGTCTCCTCCTGCACCTCTCCCTTATGATGTGGTCTTGGGAGGTACAGTGTCGACAGACTCTGAGTCAGGAAAAGACACTGTTGTTAGTGGTAGTAGTTTTGAAACTTTAATTACAGAAGATATTGAAGAATCTGACCCTAAAGCTCAAGCTAAATCTGCACCAATATCTCCAACCAAGGCAGAACTGTGGAAATCAAGTGAACCGCATGCATTGGTGATAGAAGAAGAGGACGGCTGTCCAATTTGCCTTGAAGaatatgatgatgagaatcctAAAACTCTTACAAAATGTGAACACGACTTTCACCTAGCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCTTGTCCTATATGTGATCAGGAGATGATATTTGATGAGGCACTCGACTAG 576 0.4323 MGGCCCSARKPHLHGTPVYYYCPPILEERGALTSTDGATDSLTAGLLVGLNVEESTPDTYQSPPAPLPYDVVLGGTVSTDSESGKDTVVSGSSFETLITEDIEESDPKAQAKSAPISPTKAELWKSSEPHALVIEEEDGCPICLEEYDDENPKTLTKCEHDFHLACILEWMERSDSCPICDQEMIFDEALD 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01055 191 SUPERFAMILY RING/U-box 132 187 - -
Tsu08g01055 191 Pfam Ring finger domain 140 180 IPR001841 -
Tsu08g01055 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 190 - -
Tsu08g01055 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 190 - -
Tsu08g01055 191 SMART ring_2 140 180 IPR001841 -
Tsu08g01055 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 187 IPR013083 -
Tsu08g01055 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01055 Tsu-Chr8 11546869 11551468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01055 1 191 C3H Transcription Factor Family AT4G00335 56.771 1.47e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01055 - - gmx:100804435 320.472