Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01052 ATGACTACAACTTTTGTTCATAACCGGAGTCAACACTCCGGTCACCGGAGTACGCCGGATAATATGTCCCGTTCATCTGATTTCAGTACTTCACATCAGTCAACAACTTCCTCATCGTCTTCTTCCGGCAGCCGGAATCCAGTTATTGCCGCCGCCATGTCGGTTGCCGGATTGTTTGCTGCTTGTTTCACTCCGCCGGATGCTAATAACTCTAAGAGCGTTGTAGATTCTGAGGAGTTTAAATCTACTACTTCTGCTTCTGttgcATCAAATGCTTCAAGAGGTGGTAGTCAGAGAGGGCGCGGCTCAAACCGAGGTAACAACATCGGTTTATACAACAACACAATCCAGGGGAATGAGCCTGGCGTTGTCAAGTACACCATGGAGGAAATCATCCAAGCCACAAGAAGTTTCTCTCCTTCTTTCAAGATTGGTCAAGGCGGTTTTGGGGCAGTCTACAAGACCAAACTCCGGGATGGAACTATTGTTGCAGTAAAGCGAGCTAAGAAgAGTGTTCAAGAGAAAAATTTGGGTTCGGAGTTCCAAAGCGAGGTCCAAACACTATCAAGGGTTGAACATTTGAACTTGGTAAAGTTCTACGGATATTTGGAGCAAGGGGATGAAAGAATCATTGTAGTAGAATATGTTCCTAATGGAACACTCAGAGAGCATTTAGATTGCATTCATGGAAACGTTCTCGACCTTGCTGCTCGTCTAGACATTGCAATTGATGTATCCCATGCTCTCACTTATCTTCATGTGTATATGGATCATCCTATTATTCATAGAGACATAAAATCTTCCAACATTCTCCTCACCGAGCATTTTCGAGCTAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCACCGGACAGTGACTCTGGCATGACACATGTCTCCACTCAAGTTAAGGGAACAGCAGGCTACTTGGACCCTGAATACTTGAAAACCTATCAACTAACTGAAAAGAGTGACGTCTATTCATTCGGTGTTTTGCTTGTTGAACTTGTCACAGGAAGACGCCCTATTGAACCAAAATTTGAACTCAAAGAGAGAATAACAGTAAAATGGGCTATGAAGAGGTTTATAGAGGGAAACGCGATCTCAGTCTTAGACCCAAGACTGGATCAAACTTCTGCAAATAATTTGGCTTTAGAAAAGACACTTGAACTAGCCTTACAATGCTTGGCTCCTCATAGACAAAGCAGGCCTAACATGAAGAGATGTGCCGAGGTCCTTTGGGCCATTCGCAAGGATTTCAGGGAGATATCAGCTTCAAACTTTCGATCGTATTCGACTACTTCCCAAAGGAGCGCCTCATTGAGAGAGTAA 1332 0.4377 MTTTFVHNRSQHSGHRSTPDNMSRSSDFSTSHQSTTSSSSSSGSRNPVIAAAMSVAGLFAACFTPPDANNSKSVVDSEEFKSTTSASVASNASRGGSQRGRGSNRGNNIGLYNNTIQGNEPGVVKYTMEEIIQATRSFSPSFKIGQGGFGAVYKTKLRDGTIVAVKRAKKSVQEKNLGSEFQSEVQTLSRVEHLNLVKFYGYLEQGDERIIVVEYVPNGTLREHLDCIHGNVLDLAARLDIAIDVSHALTYLHVYMDHPIIHRDIKSSNILLTEHFRAKVADFGFARQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELKERITVKWAMKRFIEGNAISVLDPRLDQTSANNLALEKTLELALQCLAPHRQSRPNMKRCAEVLWAIRKDFREISASNFRSYSTTSQRSASLRE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01052 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Tsu08g01052 443 Gene3D Transferase(Phosphotransferase) domain 1 216 437 - -
Tsu08g01052 443 Pfam Protein kinase domain 143 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01052 443 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 2 9 432 - -
Tsu08g01052 443 MobiDBLite consensus disorder prediction 1 45 - -
Tsu08g01052 443 ProSiteProfiles Protein kinase domain profile. 138 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01052 443 MobiDBLite consensus disorder prediction 70 113 - -
Tsu08g01052 443 Gene3D Phosphorylase Kinase; domain 1 107 215 - -
Tsu08g01052 443 CDD STKc_IRAK 144 413 - -
Tsu08g01052 443 PANTHER RECEPTOR-LIKE PROTEIN 55 9 432 - -
Tsu08g01052 443 SUPERFAMILY Protein kinase-like (PK-like) 121 416 IPR011009 -
Tsu08g01052 443 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Tsu08g01052 443 SMART serkin_6 138 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01052 Tsu-Chr8 11514763 11518833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01052 117 414 Receptor kinase-like Gene Family AT3G19300 40.468 2.31e-69 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Tsu08g01052 Pkinase 4.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01052 - - cam:101500599 713.761