Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01041 ATGGGTTTTCCGGTGGGTTACGCCGAAGTATTCTTCCCAAACCTATTCCTTCACACTTTAACTCTCCTCGGACTTCTCCGAAACCtcgtcttcatcctcttccaCTTCCTCGGCCTCTCCGATTTCCTCGAAACCGACACTGTCTGGCCTCACACCGGAGAAACAACTCAAACACAAGAACCTTCCAAACCACCCTCCGTGTCGGCGGTTCTAATCCGGGAACTTTTACCGGCGACAAAGTACGGTGATCTTGCCGGCGGCGTTGAAGAAGGTTGTTGTTGtgctgtttgtttgtttgaattcTCCGAGGAAGAAGAGATCCGGTGTTTGAGAAACTGTCGACATATTTTTCATCGAAATTGTGTCGACCGTTGGATTGATCTTGATATGAAAACGTGTCCTCTTTGTAGAACAAGTTTTGTTCCTGATGatatgattgatgattataATCAACGTTTATGGGTTGCTTCTGGTGTTAGTGAGTTTTATAGTTATGCAGATTAtacttcttctttttaa 519 0.3988 MGFPVGYAEVFFPNLFLHTLTLLGLLRNLVFILFHFLGLSDFLETDTVWPHTGETTQTQEPSKPPSVSAVLIRELLPATKYGDLAGGVEEGCCCAVCLFEFSEEEEIRCLRNCRHIFHRNCVDRWIDLDMKTCPLCRTSFVPDDMIDDYNQRLWVASGVSEFYSYADYTSSF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01041 172 Pfam Ring finger domain 94 137 IPR001841 -
Tsu08g01041 172 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Tsu08g01041 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 164 - -
Tsu08g01041 172 SMART ring_2 94 136 IPR001841 -
Tsu08g01041 172 SUPERFAMILY RING/U-box 93 146 - -
Tsu08g01041 172 PANTHER BRH1 RING FINGER PROTEIN 1 164 - -
Tsu08g01041 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01041 Tsu-Chr8 11408957 11409740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01041 1 159 C3H Transcription Factor Family AT1G63840 45.399 5.37e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01041 K16281 - gmx:100500261 241.121