Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01026 ATGGTATCAGTGAACCCTAATCCAGCACAAGGTTTCCATTTCTTCGATCCTTCAAACATGGGTCTTCCTGGTGTCAACAATCTTCCGCCGCCACAGCCGCAAACTACTAGCTCCGCCGCTACTGAGGATCCGAATAAGAAGATCCGAAAACCTTACACGATTACTAAATCTAGAGAGAGTTGGACTGATCAGGAGCATGAGAAGTTTCTAGAAGCTCTTCAATTATTCGATCGTGACTGGAAGAAGATTGAAGCCTTTGTTGGTTCAAAAACAGTTATCCAGataCGAAGTCATGCACAGAAGTATTTTCTCAAAGTTCAGAAGAGTGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCATCCATACCCTCAAAAAGCTCCCAAAAATGcTCCTACTGCATCCCAAGTCATGGGGCCATTGCAATCTTCACCTGCTTTTGTTGACCCAGCATACATTTATAGCACAGATTCATCATCTGTGCTTGGAACACCAGTTACTAGTCTGCCTTTATCATCTTGGAATCATAATGCTGCACCACCAGCCAGTGTGCCACAAGTGACTACAGATGACACGGGATGGACTGGATCTGGACAAGCTGTTCCTCTTAATTGTTGCTATAGCAGCAGTAATGAGAGTGCTCGCGCAGCTGGGCCAAGTAGTAAAGGGATCAATCAAGGCAACGTGGGCAAGCCAGTTAAAGTCATGCCAGATTTTGCACAAGTATACAACTTCATTGGCAGTGTATTTGATCCAAATTCAAGTAATCACCTACAGAGACTAAAGCAGATGGACCCCATAAATGTTGAAACGGCACTGTTGTTGATGAGAAACCTCTCCATTAATTTAACTAGTCCTGAATTTGAGGATCAGAAGAGGCTACTGTCATCATATGATCCTGATTGTGAGAAGGCAAAGTGTGCTAATCCAAACAACAAATCCGTGACTGTTAAATCTGAAAATGCCGTTCTGTCTGCTTAG 996 0.4367 MVSVNPNPAQGFHFFDPSNMGLPGVNNLPPPQPQTTSSAATEDPNKKIRKPYTITKSRESWTDQEHEKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKNAPTASQVMGPLQSSPAFVDPAYIYSTDSSSVLGTPVTSLPLSSWNHNAAPPASVPQVTTDDTGWTGSGQAVPLNCCYSSSNESARAAGPSSKGINQGNVGKPVKVMPDFAQVYNFIGSVFDPNSSNHLQRLKQMDPINVETALLLMRNLSINLTSPEFEDQKRLLSSYDPDCEKAKCANPNNKSVTVKSENAVLSA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01026 331 MobiDBLite consensus disorder prediction 43 61 - -
Tsu08g01026 331 SMART sant 57 105 IPR001005 -
Tsu08g01026 331 Gene3D - 61 108 - -
Tsu08g01026 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Tsu08g01026 331 CDD SANT 60 103 IPR001005 -
Tsu08g01026 331 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Tsu08g01026 331 PANTHER SWI/SNF COMPLEX-RELATED 2 326 - -
Tsu08g01026 331 PANTHER MYB TRANSCRIPTION FACTOR 2 326 - -
Tsu08g01026 331 MobiDBLite consensus disorder prediction 108 142 - -
Tsu08g01026 331 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 56 105 IPR006447 GO:0003677
Tsu08g01026 331 MobiDBLite consensus disorder prediction 12 61 - -
Tsu08g01026 331 SUPERFAMILY Homeodomain-like 52 108 IPR009057 -
Tsu08g01026 331 Pfam Myb-like DNA-binding domain 58 103 IPR001005 -
Tsu08g01026 331 ProSiteProfiles SANT domain profile. 56 107 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01026 Tsu-Chr8 11276764 11285080 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu08g01026 Myb_DNA-binding 5.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01026 - - gmx:778090 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01026 08 11276764 11285080 Tsu08g01026 08 11276764 11285080 ECH