Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01017 ATGGTAGCAGATAGCGGCGATTTCGCCGGCACCATTTGTTCAATCTGCTACGAAGGTCTCAATCCCATTACCGAAGATCTTCAATCAGTTTCCATCTGCGGCCATGTCTTTCACGAGCTCTGTTTACAGCAATGGTTCGAGTATTGTGCGACATCAAAGAAGCATACTTGCCCCGTTTGTAAGCAAGGATGCAAGGCGAAAGATGCGTGTCGGCTTTATTTTCAATCGATTGGAGATGTGAATGAATCTATTGTTACTCAGAAGCAAGTTGGTGTTGAAGAAGATGCTGGTGTTTTGCGAAAAGAAGTTAAGAGATTGGAGGGTAAAGTTTCTGGGCTTAGTACTGTTTTGGAAAAACAAACTAAGGAGTTAGATGGACTTAAAgatgagCTTTGTACTTGCAAGGAGCAAACAAAGATAGAAATAGCATCAAAGAATGAAGCCTTGAAGCAAAAAACATCCTTGCAATTCCAGCTTCATGTGAAATCAGAGGAGCTTGAGAAGTCAAATTTGGAGCGTTTTAGACTGCAAGAGAGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTGGTGTCTGATGTGGACCTTGGTGAAGATGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTCAAGAAACAGTAGACACATTAAAAAGATCTCTTGTCCTGCGGAACAGGAGTTACAAAGAGTTAATGGCAAAGTGTAATGTTTTGGGGAGAGGTGAAGCTCATTATCGTAAAAAGCTTGAGAAAGCTAAAGAGAAGATTACTAAAGCGAAGGCAAGGCTACAAGAAATGGCGACAACAATGgaagcaaaagaaaatgaatatttGAAGCAACTAAAAGTTGCCAAGAACACTGAAAATAGAATCAATTCAAATTCTGATGTATTCATGgctaacaaagtttcttcaaaAGAGCAAAGCAAACAAAGTACAACACCAAAGTATGGAATGGATTTGAATAAGAAAGACAACAACAAACCTTTACAATCTTTGAAGACAGAGAACTCCAAAGCTACAAAAAATAAGGATATGAATATTAGTAATGTAAGTAAACCTACCGTGTTTCCCGATGAAGAGATAGATTGTATCATTATCGACGAAGATGACTACAAAGGTCATGACAAGGTTGATCTAGGAATGCCAGAAACAACACCTAGTACAGAGACTAAAACATCATTGGAAGGAAAATGCAATTTGGCTGAGTCTTCAAGAATTGATATTGACACCGAAACGGCTGACATTGCTGCTGACACTATGGATGAAGATGTGATACTACAAGCCAATGCTAAACAAGCTGAACCAATGGTTAACATTAGAAAGGAGTCACCATTAACAACTTCAAGTCCAGTGGATATATGCTTTTCTGGTGGATTGTTTGGTCCTGATGGAACTCAAAGATACTTGGGTAAATGGTGCAAGCGACGACAAAATGGTGAATCAACATCCACACAAGGGAATTTGATATCTGTAGGAGCTGATGGTAGAGGTGGCAAAGTTAAAGTTCTAAGGTCTCCTAGCCAAGCTTTCTCGGATGGTAAGGAAAATTCATCAGCTTCAAAAAGGTTGAAGCTTGGACCTAACAAAGCAAGTAGTTTACAGCAATCCAGAGGGTGTCTGCAGATTGAACACTTTTTTGGGAGGGTAGGTCAGTAA 1674 0.3883 MVADSGDFAGTICSICYEGLNPITEDLQSVSICGHVFHELCLQQWFEYCATSKKHTCPVCKQGCKAKDACRLYFQSIGDVNESIVTQKQVGVEEDAGVLRKEVKRLEGKVSGLSTVLEKQTKELDGLKDELCTCKEQTKIEIASKNEALKQKTSLQFQLHVKSEELEKSNLERFRLQERNMALAKELAALKLVSDVDLGEDEVLKLATLGNGANSQETVDTLKRSLVLRNRSYKELMAKCNVLGRGEAHYRKKLEKAKEKITKAKARLQEMATTMEAKENEYLKQLKVAKNTENRINSNSDVFMANKVSSKEQSKQSTTPKYGMDLNKKDNNKPLQSLKTENSKATKNKDMNISNVSKPTVFPDEEIDCIIIDEDDYKGHDKVDLGMPETTPSTETKTSLEGKCNLAESSRIDIDTETADIAADTMDEDVILQANAKQAEPMVNIRKESPLTTSSPVDICFSGGLFGPDGTQRYLGKWCKRRQNGESTSTQGNLISVGADGRGGKVKVLRSPSQAFSDGKENSSASKRLKLGPNKASSLQQSRGCLQIEHFFGRVGQ 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01017 557 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Tsu08g01017 557 Coils Coil 247 295 - -
Tsu08g01017 557 SMART ringv_2 12 61 IPR011016 GO:0008270
Tsu08g01017 557 Coils Coil 110 130 - -
Tsu08g01017 557 Pfam Ring finger domain 12 61 IPR001841 -
Tsu08g01017 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 63 IPR013083 -
Tsu08g01017 557 MobiDBLite consensus disorder prediction 298 346 - -
Tsu08g01017 557 MobiDBLite consensus disorder prediction 515 540 - -
Tsu08g01017 557 SMART ring_2 13 60 IPR001841 -
Tsu08g01017 557 MobiDBLite consensus disorder prediction 298 325 - -
Tsu08g01017 557 CDD RING-H2 13 61 - -
Tsu08g01017 557 SUPERFAMILY RING/U-box 12 66 - -
Tsu08g01017 557 MobiDBLite consensus disorder prediction 484 540 - -
Tsu08g01017 557 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 556 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01017 2 557 C3H Transcription Factor Family AT4G01270 42.179 6.86e-128 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01017 K11985 - gmx:100812811 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01017 08 11179386 11186639 Tsu08g01017 08 11179386 11186639 ECH