Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01008 ATGTCTTCCTCAAACCCTTtctctccaccaccaccaccaccaccaccacttccTTACCTCACAAACCTCGGCTTCGGTTACTCCATAGCCATAGCTCTTGGTTTCCTCTTCCTTCTTTCAACCTTAATCCTCTCTTCTTACCTCTGTTGTCGCACTTTCCGTAACCGTAACAATAACCGtcgcagcaacaacaacaaccatcaCCAAGATGACGGCGTGGTTTTACCGAGGGTAATTTTTGTAgcagaagaagatgaagatcgAGATGATGTTGTTTTAGGTTTAGATCAGAATGTGATAAATTCTTATCCGAGGTTACAATATGGTAAAGATTTGGGACATGATAGTACTTGTTCGATCTGTTTATGTGAGTATAAGGATTTGGAGATGTTAAGGATGATGCCTGAATGTAGACATTATTTTCATCTTTGTTGTCTTGATTCTTGGTTGAAACTTAATGGTTCTTGTCCTGTTTGTCGAAATTCGCCTATGCCGACGCCGTTGTCTACGCCTTTACAAGAAGTTGTTCCTCTTTCTCATTACATTGGTGAAAGAAGGGTAAGGAGGTAG 570 0.3456 MSSSNPFSPPPPPPPPLPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRNNNRRSNNNNHHQDDGVVLPRVIFVAEEDEDRDDVVLGLDQNVINSYPRLQYGKDLGHDSTCSICLCEYKDLEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRVRR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01008 189 Pfam Ring finger domain 117 160 IPR001841 -
Tsu08g01008 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 165 IPR013083 -
Tsu08g01008 189 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Tsu08g01008 189 PANTHER RING-H2 FINGER PROTEIN ATL67 17 187 IPR044289 GO:0016567|GO:0016740
Tsu08g01008 189 SUPERFAMILY RING/U-box 103 165 - -
Tsu08g01008 189 SMART ring_2 118 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01008 Tsu-Chr8 11087689 11088561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01008 13 179 C3H Transcription Factor Family AT5G06490 37.433 1.34e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01008 - - vra:106773185 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01008 08 11087689 11088561 Tsu08g01008 08 11087689 11088561 ECH