Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01006 ATGAACATTTTTCCTACCATACTCATTATTGCTAACATACTATTTTTCTTCTCCAAAATTTCTTCAGCAATAGATACCATTACACAATCACAACCACTTCATGATGGAAGCACCTTGGTTTCTAAGGATGGAACATTTGAGTTGGGTTTCTTCAATCTTGGTAATTCCAAAAACCGCTACGTTGGAATTTGGTACAAAAATATTCCTAATAGAAGAGTTGTTTGGGTTGCTAATCGTGACAACCCAACCAAAGATAATTCTAGCAAGTTGATCATAAGTCGAGATGGAAACCTCGTGCttctaaatcaaaatcaaactctTATATGgtcaacaaaaacaacaacaagagTTGCAATTTCAAGTCCAATTGTGCAACTTTTGGACAACGGAAATTTAGTACTTAAAAATGAGAAGCAAGACAACACcgatgaaaatgaaaattttctatGGCAGGGTTTTGATTATCCTTGTGATACAGTATTACCAGGAATGAAAATGGGATGGGACAGAAAAACAGGTCTTAATAGGAATCTCGTTGCATGGAAAAATTGGGATGATCCATCTTCAAGTGATTTTACTTCAGCTTTGGTACGAACTCCTAATCCTGAAAGCTTTATTTGGAAAGGTTCAACAATAATCTATAGAACAGGACCGTGGACCGGTCCTCGTTCTAGTGGAATAGTTGGATTGACAACAAATCCATTTTATGGTTATGAGTTTGTAAACAATGAAGATGAATTGTATTATATGTTCACACTCAAGAATAATTATGTTACTATAGTTGTTTTGAACGAAACAAGTTCTACTCGTATTCGTCTCAATTGGGTTTCAGATTCCAATTCATGGAAAAATTACCTAATCTTACCACAAGATAATTgtgataattataatatttgtgGAAAAAATGGACTTTGTACGCTTAATGACTCACCCATTTGTCAATGTTTAGATGGATTTAAGCCGAAATCGCCACAACAGTGGAGTGCAACGGATTGGAAACAAGGATGTGTGCGTAATGGTAATTGGAGTTGTGGGGTGAAAGACAGAGATgggtttaaaaaaattgttgggaTGAAATTGCCAGATACTACACATTCTTGGATTGATGAGAAAATGACACTTAAAGATTGCaaagaaaaatgtttgaaaaattgttCTTGTAGTGCTTACTCAAGTTTAGAATCAACTGGAACAGGTAATGGTTGTTCAATATGGTTTGGTGATCTTGTTGATCTTAGAGTTTCAGCTAGTGGACAAGATCTATATATTCGAACAGATTCATCAGATACCGGTGATAAAAATGGGAAAATGAAAAAAGTGGTATTGGCAGTTTCAATTCCAGTTTCAGTAGTCCTTGTGATGTTATTGGCATTCATCTACATACATAAAACAAAGGCGAAGTATAAAAaaaaaaccaCAAGGTccgaagagaaagaagaagataaatACGAAGATTTTGAGCTTCCTATCTTTGATCAAGCTACAATACTCAAGGCAACAAATAATTTCTCTTTTGACAACAAGCTCGGTGAAGGAGGTTTTGGACCAGTATATAAGGGTACATTGCTCGATGGACAAGAAATTGCTGTCAAAAGACTTTCGAGGAGTTCTGGTCAAGGACTTAAAGAGTTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACACCGAAATCTTGTTAAAGTTGTTGGTTGTTGTATTGAAGGTGGGGAGAAAATGTTGGTCTACGAATACATGTCCAACAAAAGTCTAGATTCATTTCTTTTTGATCCATTTCAAAGTAAATTGTTAGATTGGTCCGCACGCTTTAACATTATATTTGGAATTGCTCGAGGCCTTCTTTATCTTCATGTAGATTCAAGATTACGAATCATACACAGAGATATGAAAGTGAGTAATATTTTATTGGACAATGAAATGAATCCCAAAATTTCAGATTTTGGCATGGCTAGAATGTGTGGAGGTGATCAGATCGAGGGGACAACAGAAAAAATAGTAGGCACATACGGCTATATGGCACCAGAATATGCTTTTGATGGATTATTCTCTATAAAATCAGATGTATTTAGCTTCGGtgtattattattagaaattatCAGTGGAAAGAAAAATAGAGGACATAGCTATCAAGAGCATGATCATAATCTTATTGGATATGCATGGAGGTTGTGGAAAGAAGGTATACCACTCAATTTGATTGATGATTGTTTGAGGAATTCATGCATTGATTCTGAAGCTGTACGTTGTATTCAAATTGCTCTactatgcctacaacatcatcCTGATGATAGACCAAACATGACAACTGTGGTTGTGATGCTAAGTAGTGAAAATACTTTACCAAAACCAAAGGAACCTGGTTTCTTAATTAAAAAGTTCTCAGGTGATGGACAATCTTCTTCAACGAATGAAATAACTATTTCACTAATAGATGCTAGATAA 2442 0.3272 MNIFPTILIIANILFFFSKISSAIDTITQSQPLHDGSTLVSKDGTFELGFFNLGNSKNRYVGIWYKNIPNRRVVWVANRDNPTKDNSSKLIISRDGNLVLLNQNQTLIWSTKTTTRVAISSPIVQLLDNGNLVLKNEKQDNTDENENFLWQGFDYPCDTVLPGMKMGWDRKTGLNRNLVAWKNWDDPSSSDFTSALVRTPNPESFIWKGSTIIYRTGPWTGPRSSGIVGLTTNPFYGYEFVNNEDELYYMFTLKNNYVTIVVLNETSSTRIRLNWVSDSNSWKNYLILPQDNCDNYNICGKNGLCTLNDSPICQCLDGFKPKSPQQWSATDWKQGCVRNGNWSCGVKDRDGFKKIVGMKLPDTTHSWIDEKMTLKDCKEKCLKNCSCSAYSSLESTGTGNGCSIWFGDLVDLRVSASGQDLYIRTDSSDTGDKNGKMKKVVLAVSIPVSVVLVMLLAFIYIHKTKAKYKKKTTRSEEKEEDKYEDFELPIFDQATILKATNNFSFDNKLGEGGFGPVYKGTLLDGQEIAVKRLSRSSGQGLKEFKNEVILCAKLQHRNLVKVVGCCIEGGEKMLVYEYMSNKSLDSFLFDPFQSKLLDWSARFNIIFGIARGLLYLHVDSRLRIIHRDMKVSNILLDNEMNPKISDFGMARMCGGDQIEGTTEKIVGTYGYMAPEYAFDGLFSIKSDVFSFGVLLLEIISGKKNRGHSYQEHDHNLIGYAWRLWKEGIPLNLIDDCLRNSCIDSEAVRCIQIALLCLQHHPDDRPNMTTVVVMLSSENTLPKPKEPGFLIKKFSGDGQSSSTNEITISLIDAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01006 813 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Tsu08g01006 813 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 806 - -
Tsu08g01006 813 Gene3D Phosphorylase Kinase; domain 1 462 578 - -
Tsu08g01006 813 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Tsu08g01006 813 ProSiteProfiles PAN/Apple domain profile. 344 426 IPR003609 -
Tsu08g01006 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Tsu08g01006 813 Gene3D - 18 152 IPR036426 -
Tsu08g01006 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Tsu08g01006 813 Pfam D-mannose binding lectin 73 182 IPR001480 -
Tsu08g01006 813 Pfam PAN-like domain 344 412 IPR003609 -
Tsu08g01006 813 CDD PAN_AP_plant 343 425 - -
Tsu08g01006 813 Gene3D Transferase(Phosphotransferase) domain 1 579 784 - -
Tsu08g01006 813 SMART blect_4 30 156 IPR001480 -
Tsu08g01006 813 Gene3D Hepatocyte Growth Factor 343 422 - -
Tsu08g01006 813 Pfam Protein tyrosine and serine/threonine kinase 504 773 IPR001245 GO:0004672|GO:0006468
Tsu08g01006 813 SMART ntp_6 347 425 IPR003609 -
Tsu08g01006 813 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Tsu08g01006 813 ProSiteProfiles Protein kinase domain profile. 503 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01006 813 CDD STKc_IRAK 509 774 - -
Tsu08g01006 813 Pfam Domain of unknown function (DUF3403) 775 813 IPR021820 GO:0004674
Tsu08g01006 813 CDD B_lectin 30 156 IPR001480 -
Tsu08g01006 813 SMART serkin_6 503 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g01006 813 SUPERFAMILY Protein kinase-like (PK-like) 485 774 IPR011009 -
Tsu08g01006 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 187 IPR036426 -
Tsu08g01006 813 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 32 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01006 Tsu-Chr8 11078567 11081952 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01006 441 791 Receptor kinase-like Gene Family AT4G23230 54.108 9.50e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g01006 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01006 - - gmx:100790436 1138.64