Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00999 ATGGAGAACCATAATAAGGTGGTTGTGCTAATGGTGTACACTTTCTTCTTTTGCTCCATGCTCACTTTCTCTAAACAAAACACTCTTACTACTATTGCTCGAAATCAGTTTATGCAATACGGTGATAAGCTTGTTTCTGCAGCCGGAGTCTTTGAAGCAGGATTTTTCGACTTCGGAGATCCACAACGCCAATACTTTGGTATATGGTACAAGAGAATATCACAAAGGACTTATGTGTGGGTTGCCAATAGAAATACCCCTCTACAAAACTCAACAGCAATGCTGAAACTCAATGATCAGGGAAGTCTTGTTATTCTTGATGGCTCCAAAGGTATTATCTGGTCCTCCAATTCGTCGATAAATGTGGTGAAATTGGCTGTTGTCCAGTTATTGGATTCAGGAAACCTTGTTGTGAAAGATGCAAACAGCAGAAGCGGCGAGAGTGAGGATTTTCTGTGGGAAAGTTTTGATTATCCCGGTAACACTTTCCTTCCTGGAATGAAGCTGAAAAGTAATTTAGTTACTGGTCCATATAGATATCTCATATCTTGGAGAAACTCTGAAGATCCTGCTGAAGGTGAATGTTCAGATAAGATAGATACACATGGTTATCCTCAACTTGTTACTGCAAAGGGAGCAATAATTCTGTATAGAGCAGGGTCATGGAATGGATTTCTTTTCACTGGTGTTTCTTGGCAAAAATTGCATGGATTCTTGAATTTCTCGGTAGTGTTCAATGACAAAGAATTCTCTTATCAATATGAAACTATGAACAGTTCAATTATTACTAGAATGGTGCTAGATCAAGACGGAAACTCACAACGATTTCTGTGGTCAGATAGGAAACAAATTTGGGAGGTTATAACTACTCGTCCTGTAGACCAGTGTGATGAATATGCCTTGTGTGATATCAACTCTAACTGCAATATTAATGGCTTTCCGGTATGCGAGTGCTTGAAAGGTTTCATGCCAAAATTTCAAACAAGATGGAAGTTATCGAATTGGGCAGGCGGGTGTGTAAGGAAAACACATTTAAATTGTCTTCCTGGAGATGGATTTTATAAGTACACAAGCATGAAGTTGCCAGATACGTCATCATCGTGGTTTGACACGAACTTAAGCCTTGAGGGATGCaagaaaatttgtttgaaaaactGTTCTTGCACTGCATATGCAAATTTAGATATCAGAGATGGTGGAAGTGGCTGCTTACTTTGGTTTAATAACATTGTTGACTTGAGAAAACATCCAGACCAAGGACAAGACATTTACATACGACTCGCATCTTCAGAATTAGATCATACAAAGATGCATGCTGGAATTCTTGTAGGGGTTGTTGCATTCATTACAGGACTAACCCTAATTGTAATGGTGACATCAGCATATAGAAAGAAGCTTGGATGTATACGTAAGATTTTTCACAAGGAGAAGGAAGATGGTGACTCGGcaacaatatttgatttttcaatcATGGCTAGTGCAACAAATCACTTCTCTAACAGAAATAAGATAGGAGAAGGTGGTTTTGGACCGGTGTACATGGGCACAATGGTAGATGGCCGAGAGATTGCTGTTAAGAGGCTTTCTAAAACATCAGGACAAGGAACCGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGCTCTTTTCAACAAGATGAAAAGTTGTTAATCTACGAATTCATGCCTAACAGAAGTTTGGACTACTTTATTTTTGATACTATGCGAAGCAAATTACTAGATTGGACAAAGCGCTTGGAAATTATTGATGGGATTGCTCGGGGGCTGCTGTATCTCCATCAAGATTCTACACTAAGAATCGTACATAGAGATCTCAAGACAAGCAACATTCTTCTTGATATTGATATGATTCCAAAGATATCAGATTTTGGTTTAGCCCGATCATTTATGGGAGACCAAGCTGAGGCTAATACAAATAGAGTGATGGGAACATAtggataTATGCCTCCAGAATATGCAGTTCATGGATCTTTCTCAATAAAATCCGATGTTTTTAGCTTTGGAGTCGTGGTACTTGAGATAATTAGCGGTAAGAAGAATAGTGGATTTTCTGACCCTCTACATCGTCTAAACCTTCTTGGCTATGCATGGAGACTGTGGATTGAAGAAAAGCCAGAGGAGTTGATAGCCGACATATTATATGATGAGGCGATATGTTCAGAAATAATAAGATTTATTCATGTGGGTCTATTGTGTGTACAACAGCTACCAGAAAATAGGCCTAAAATGTCATCTGTGGTTTTTATGCTAAAGGGTGAAAAGTTACTTCCCGAACCAAGTGAACCGGGGTTCTACGCAGGAAGAAATAATACAAATAGCACAGGATCATCTTCAAAGGGAAGCATTCCTGCGAAGCAGATCAAATCCGATCATAGGAAAGTTGATGCCAAGGAAAGCGAAAAGGGAACAACGAGTGTGTCTGAAGAAAATGTGACAAGGAAAGACTCTTACTTAGTCAACAAACAACAATCCGCACCTCAGCACAAGGGATCTAATTTACCTTCTGTTTGTCTTAGAGTTGATCCACTACCAAGAAAGAAAATTGAGACTAATACCTCCGGAAGTGAAGTACAAGTCGAAAATAAGGTATTCACTGAAGAACTCCCAGTAGGTCAGCTTGATGAGAAAAAATCTGAATATAATGCAAATGAGAGAACATGTTATTCCACCGATGAACTAGAAAAGCCACTGGTTGACGAAAAAGAAGAGGACCTGTTGGCTGGATATTTTCTATACTTTAGTTTATTAGTTTGTGCATTACCAATTTTCTAA 2829 0.3839 MENHNKVVVLMVYTFFFCSMLTFSKQNTLTTIARNQFMQYGDKLVSAAGVFEAGFFDFGDPQRQYFGIWYKRISQRTYVWVANRNTPLQNSTAMLKLNDQGSLVILDGSKGIIWSSNSSINVVKLAVVQLLDSGNLVVKDANSRSGESEDFLWESFDYPGNTFLPGMKLKSNLVTGPYRYLISWRNSEDPAEGECSDKIDTHGYPQLVTAKGAIILYRAGSWNGFLFTGVSWQKLHGFLNFSVVFNDKEFSYQYETMNSSIITRMVLDQDGNSQRFLWSDRKQIWEVITTRPVDQCDEYALCDINSNCNINGFPVCECLKGFMPKFQTRWKLSNWAGGCVRKTHLNCLPGDGFYKYTSMKLPDTSSSWFDTNLSLEGCKKICLKNCSCTAYANLDIRDGGSGCLLWFNNIVDLRKHPDQGQDIYIRLASSELDHTKMHAGILVGVVAFITGLTLIVMVTSAYRKKLGCIRKIFHKEKEDGDSATIFDFSIMASATNHFSNRNKIGEGGFGPVYMGTMVDGREIAVKRLSKTSGQGTEEFKNEVKLMATLQHRNLVKLLGCSFQQDEKLLIYEFMPNRSLDYFIFDTMRSKLLDWTKRLEIIDGIARGLLYLHQDSTLRIVHRDLKTSNILLDIDMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGKKNSGFSDPLHRLNLLGYAWRLWIEEKPEELIADILYDEAICSEIIRFIHVGLLCVQQLPENRPKMSSVVFMLKGEKLLPEPSEPGFYAGRNNTNSTGSSSKGSIPAKQIKSDHRKVDAKESEKGTTSVSEENVTRKDSYLVNKQQSAPQHKGSNLPSVCLRVDPLPRKKIETNTSGSEVQVENKVFTEELPVGQLDEKKSEYNANERTCYSTDELEKPLVDEKEEDLLAGYFLYFSLLVCALPIF 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00999 942 SMART ntp_6 348 427 IPR003609 -
Tsu08g00999 942 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Tsu08g00999 942 CDD STKc_IRAK 504 771 - -
Tsu08g00999 942 PIRSF SRK 2 830 IPR024171 GO:0004674
Tsu08g00999 942 Gene3D - 24 156 IPR036426 -
Tsu08g00999 942 SMART blect_4 35 159 IPR001480 -
Tsu08g00999 942 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Tsu08g00999 942 ProSiteProfiles PAN/Apple domain profile. 347 428 IPR003609 -
Tsu08g00999 942 MobiDBLite consensus disorder prediction 779 855 - -
Tsu08g00999 942 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 190 IPR036426 -
Tsu08g00999 942 MobiDBLite consensus disorder prediction 828 850 - -
Tsu08g00999 942 Pfam PAN-like domain 349 413 IPR003609 -
Tsu08g00999 942 Pfam D-mannose binding lectin 77 185 IPR001480 -
Tsu08g00999 942 SUPERFAMILY Protein kinase-like (PK-like) 483 769 IPR011009 -
Tsu08g00999 942 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 20 789 - -
Tsu08g00999 942 MobiDBLite consensus disorder prediction 784 803 - -
Tsu08g00999 942 ProSiteProfiles Protein kinase domain profile. 498 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00999 942 Gene3D Transferase(Phosphotransferase) domain 1 574 775 - -
Tsu08g00999 942 Gene3D Hepatocyte Growth Factor 345 429 - -
Tsu08g00999 942 SMART serkin_6 498 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00999 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Tsu08g00999 942 Pfam Protein tyrosine and serine/threonine kinase 501 766 IPR001245 GO:0004672|GO:0006468
Tsu08g00999 942 MobiDBLite consensus disorder prediction 804 827 - -
Tsu08g00999 942 CDD B_lectin 44 159 IPR001480 -
Tsu08g00999 942 CDD PAN_AP_plant 343 428 - -
Tsu08g00999 942 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 789 - -
Tsu08g00999 942 Gene3D Phosphorylase Kinase; domain 1 472 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00999 Tsu-Chr8 10970929 10978232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00999 479 783 Receptor kinase-like Gene Family AT4G23230 57.097 3.77e-117 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g00999 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00999 - - gmx:100819820 1116.29