LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00963	ATGTGCAGTTTCTATTTCTTCTCCATCTTctccatcatcttcttcttcttaacaCCATTAACATTAACCTCATCTTCTGAACCAAGAAGGTTTCTTCATCAACCTTTTGAATCTCCAAACTCACTCTCACCTTCTCAATCTCCAAACCCATCTCCACCTTCACaatcatcatcaccaccaaATCCAAAACTACCATTTTCCACAACTACCCCTaacacttcttcttcttcatcaacatcatcaaatacACCCCCTTTTTTCCCAACATACCCTTCACCTCCACCACCACCTTCACCTTCTTCTTTCGCTTCATTCCCTGCTAACATCTCTTCTCTTATTCTTCCTCAATCCTCTAAACCCaaatcttcttcttccaaaCTCCTCGCCGTCGCCATTACTTCTGTTATCGCCGCCGTCGCTGTTGTTTCCATTTCAGCTTTCATTTACTGtcgcagaaaaagaaaaaacttttcTAATGATGATAAAACACTCAGATCCGATAGTAGTATTCGTCTCTTCCCTCGCGACGGTGGCGGCGCCACCACCGGCACCACCGTCGTGAAGTCGAGGAATGTTTCTAATACTAGCTCGGAGTTTCTTTATCTTGGTACCATTGTTAACTCTCGTGGTGGTGATGATCTACCTAAtggcggtggtggtggtggtcgGAATCCTAGAAAAATGGACTCGCCGGAGCTTCAACCGTTACCGCCGCTTGCGCGACAAGGCTCGCGGAGACTTTACGATGAAGGTGGGAATgctgttgaagatgatgaagaagagttTTATTCTCCAAGAGGTTCTTTGAACGGAATTGGATCGGGTTCTCGGAGAGTTTTCGCCGGAATTTCTGCTGAGAATTTGGTTGGTCGGAGTAGTAGTGAAtctacttcatcttcttcttattcatcttcttctgcGTCACCGGATCATTCTCATTCGATTAGTCTTTCGCCGCCGGTAAGTTTAAGTCCAAGAAGATCACAGTCAAAGTCGCCGGAAAATGTACTCACACCACCACCGACACAGCCGTTGCTTAGCACCGACGGTGGAAGAAGCTCGTTTTCTTCATCAACAGTTTCTTCTCCACGTGCTTCTTCAAACTTGAATGTTAAGTCTTCTTGTTCAATGTCTTCTACGCCGGAGAAAATCTTTGCCGGAGAATGTCAATCACCGTCTTTATCACCTTTGAATCTTTCACCGGTGAAAAACTCAGATGGGTCTTTTGTAAAAGTTGAAAAGACTCAATCTTGTAATGAAAATGGTTCTTCTCCGAGATTATCTAATGCTTCTAGTGGTAAATCTTCTTCTTCGGCTTTTAGTTTACCATCGCCGGAGAAAATGACGATGATGCAAGATCATAATAATCATGGTTTGGATCAGTCTCCAACTATTTCAGATGTTTCAGATCGGTTTAGACATTCTCCTTTGTCATCATCACCTCTTTCACCTAAGCTTTTTTCATCGCcggagagagagatgaacacgATGAACATGATGAACACCATGAACACGATGAACTCGATGAACTCAATGAACACTCAACCACCACCgccgccaccaccaccaccttctAGGAAGCATTGGGAGATTCCTGATCTTTTAACACCAATTGTTGAAACACCAACTGTTTTGATTCAACATGGTGTTGTTAATCAAAGAAAACAATGGGAAATTCCGGTTCTTTCAACACCAATTGCACCTTCTATTAGTGTTTCAGCAGCTCCTCCACCTCCGCCTCCACCACCACCGGCAATGCCGATACGGCAAAGGAAGCAATGGGAAGTGCCATCTCCAACAACTCCTGTCGGTCAACCGGTGGTTTGTAGGCCGCCGGAATTGAAACCTCCTTCAAGGCCTTTTGTGTTGCAAACACCTCCAAATACATTGGTTTCTCCTGTCGAATTGCCACCTAGTTTTGAGGAGAATGAAGAGGTTTCTAAACCAAAGTTGAAGCCTTTGCATTGGGATAAAGTGAGGGCTAGTTCGGATCGTGAAATGGTTTGGGATCATTTGAGATCCAGCTCATTTAAGTTGAATGAGGAAATGATAGAAACATTGTTTGTGGTGAACACACCAAATTCAAAACCAAAAGATTCTACACCACGTTCAGTTCTTGCACCTCAACATCATGAGGATAGGGTATTAGATCCTAAAAAGTCACAAAATATTGCTATATTGCTTCGAGCTGTTAACGTTACGGTAGAGGAAGTGTGTGAAGCACTATTAGAAGGTGTTACTGATACACTTGGAACCGAACTACTTGAAAGCTTGTTAAAAATGGCGCCAACCAAGGAAGAAGAGCGTAAATTGAAGGAACATAAAGACGACTCTCCAAACAAACTTGGTACTGCTGAGAAATTTTTGAAGGCAGTTCTCGATGTACCTTTCGCATTTAAAAGGGTGGAAGCTATGCTTTACATAGCCAATTTTGAGTCTGAAGTGGAGTATCTTCGTAAATCATTTCAAACTCTAGAGGTTGCATGTGAAGAGCTACGAAACAGTAGAATGTTCTTGAAGCTTCTAGAAGCTGTGCTCAAAACTGGAAACCGCATGAATGTTGGAACAAACCGAGGTGATGCACATGCATTCAAGCTCGATACACTTCTCAAGCTGGTTGATGTCAAAGGCGCAGACGGGAAAACAACTCTTCTACATTTTGTTGTACAAGAAATCATTAGAACTGAAGGAGCTCGTCATTCAGATACTACCACTGATCAAACACCAGCCGCAACATTGAGCGATGACGCCAAGTGTAGAAGACTCGGCCTTCAAGTAGTATCTAGTCTAAGTTCCGATCTAGCTAATGTGAAGAAAGCCGCAGCGATGGACTCCGAAGTTCTCACAAGCGAAGTCTCTAAACTTTCAAAAGGAATCAAACACATTGCCGAGATCGTGAAATTGAATCAAACGGCGGGATCGGACGAAACCGTTAAAAAATTCACAGAATCAATGAACAAGTTCATGAGAATGGCTGAGGAGGAGATTGTTAGAATTCAAGCACAAGAAAGTGTTGCTTTATCACTTGTGAAGGAGATCACAGAATATTTTCATGGAAACTTGTCTAAAGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGACTTTTTAAATGTTCTTGATAGAGTATGCAGAGAAGTTGGTAATATAAATGAAAAGACCATGATTAGTTCAGCTCATAGATTTCCGGTTCCGGTGAACCCTATGCTTCCACAACCACTTCCTGGATTACACGGAAGGAGAAATTACAGCTCCTCAGACGATGATAGTTCGTCTTCTTAG	3288	0.3957	MCSFYFFSIFSIIFFFLTPLTLTSSSEPRRFLHQPFESPNSLSPSQSPNPSPPSQSSSPPNPKLPFSTTTPNTSSSSSTSSNTPPFFPTYPSPPPPPSPSSFASFPANISSLILPQSSKPKSSSSKLLAVAITSVIAAVAVVSISAFIYCRRKRKNFSNDDKTLRSDSSIRLFPRDGGGATTGTTVVKSRNVSNTSSEFLYLGTIVNSRGGDDLPNGGGGGGRNPRKMDSPELQPLPPLARQGSRRLYDEGGNAVEDDEEEFYSPRGSLNGIGSGSRRVFAGISAENLVGRSSSESTSSSSYSSSSASPDHSHSISLSPPVSLSPRRSQSKSPENVLTPPPTQPLLSTDGGRSSFSSSTVSSPRASSNLNVKSSCSMSSTPEKIFAGECQSPSLSPLNLSPVKNSDGSFVKVEKTQSCNENGSSPRLSNASSGKSSSSAFSLPSPEKMTMMQDHNNHGLDQSPTISDVSDRFRHSPLSSSPLSPKLFSSPEREMNTMNMMNTMNTMNSMNSMNTQPPPPPPPPPSRKHWEIPDLLTPIVETPTVLIQHGVVNQRKQWEIPVLSTPIAPSISVSAAPPPPPPPPPAMPIRQRKQWEVPSPTTPVGQPVVCRPPELKPPSRPFVLQTPPNTLVSPVELPPSFEENEEVSKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNSKPKDSTPRSVLAPQHHEDRVLDPKKSQNIAILLRAVNVTVEEVCEALLEGVTDTLGTELLESLLKMAPTKEEERKLKEHKDDSPNKLGTAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYLRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARHSDTTTDQTPAATLSDDAKCRRLGLQVVSSLSSDLANVKKAAAMDSEVLTSEVSKLSKGIKHIAEIVKLNQTAGSDETVKKFTESMNKFMRMAEEEIVRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLNVLDRVCREVGNINEKTMISSAHRFPVPVNPMLPQPLPGLHGRRNYSSSDDDSSSS	1095

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g00963	1095	MobiDBLite	consensus disorder prediction	210	276	-	-
	Tsu08g00963	1095	MobiDBLite	consensus disorder prediction	67	85	-	-
	Tsu08g00963	1095	MobiDBLite	consensus disorder prediction	86	101	-	-
	Tsu08g00963	1095	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	641	1068	IPR015425	-
	Tsu08g00963	1095	SMART	it6_source	641	1057	IPR015425	-
	Tsu08g00963	1095	MobiDBLite	consensus disorder prediction	505	528	-	-
	Tsu08g00963	1095	MobiDBLite	consensus disorder prediction	1072	1095	-	-
	Tsu08g00963	1095	PANTHER	FORMIN-RELATED	7	1095	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Tsu08g00963	1095	MobiDBLite	consensus disorder prediction	31	101	-	-
	Tsu08g00963	1095	Pfam	Formin Homology 2 Domain	645	1042	IPR015425	-
	Tsu08g00963	1095	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	576	1055	-	-
	Tsu08g00963	1095	Gene3D	Formin, FH2 domain	640	1052	IPR042201	-
	Tsu08g00963	1095	MobiDBLite	consensus disorder prediction	45	66	-	-
	Tsu08g00963	1095	MobiDBLite	consensus disorder prediction	289	490	-	-
	Tsu08g00963	1095	PANTHER	FORMIN-LIKE PROTEIN 1	7	1095	-	-
	Tsu08g00963	1095	MobiDBLite	consensus disorder prediction	513	528	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00963	Tsu-Chr8	10611351	10616335	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g00963	82	343	FH2 protein (formin) Gene Family	AT3G25500	45.290	5.36e-28	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g00963	-		-	gmx:100802678	1201.42