Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00961 ATGACTGCAAATAATGATAGAGGAAATGATCAAGAACATAAGAGAAAAATCAATGACCCTTTACCAAGGTCATGCATACCTAGAAATGTTACTTCTTTAGCTGGATCTGGTCCTACTAGTACTAGTTTTTGTTCAACTACAGATCCTAAACACATTGTTGAAAAGTTACATGTTAGGAATTATAAGAATTTGAATCACCAATTAGCTTTTGAGTCTAAGTATAGTAATAGTTTGATTAGAGATAACCCTTTGAAGGTTAAAGGAGGATTAAAGGGAAAGGGAATTGATTctagaaagaatttgaagttgaatCATCAACCAGATAAAGGTTTTGTTAATATGAAGGGAAAGGAAATTATTTACAAAGATTTAGGTAATGTTGTGTCGGGTGCGGAATGTTTTAATGATGAACTTAACTTAAGAGTGTGGATGAAGTCTGAAAGtcgaaaaatgaagaaatcgGAAAGGTTGTATTTGTTTAAACAGATTTTGGAATTGGTTGATTTTGCGCACTCACAAGGATTTGTCTTGCAAGATTTGAAACCGTCTTGTTTCGCTTTGTTGCctttgaataaaattaaatacatcgGTTCGTATGGTCAAGAAGTGTTTGATGACGAAAAATCGTGTTTCACGTTATTTAAGTCATGTCTTAAGGCCATCATGACTTGCAATGTGACAAAGAAAATGCCATGGGAACATGATACATGTGGTTGTCAAAGTTTGAATGGTACAAAGAAACAAAAGCTTTGTGAAGAGACGACATCTCTTAAGCAGCAGCATCACTTCAACTGCAGTCATGGCTGTGACACAAACATGTTTATGGAATCAAGTTTGTGCTTAGATGGTTCGAGTTATCAACATGGTTTTGCAGAAGAAAAACAGTTTGTTTCTGAAACTATTCAGTTAGAAGAGAAGTGGTATTCTTGTCCAGAAGTGCTTAATGATGGAACTAATACATTTTCATCAAATGTTTATAGTCTTGGAGTTCTTGTTTTTGAGTTGCTGTGCAATATTGAATCATTGGAAGCACATTCAACTGTCATGTTTGATATGCGTCATAGAATCTTACCTCCAAAATTTCTATCACAAAATGCAAAGGAAGCTGGCTTTTGTCTTTGGCTTCTTCATCCTGAACCTTCTTCTCGTCCGAATACCAAGATGATTTTAGAATCTGAATTTATACGCGAGTTAGCGGAATTAGATTCTGAAAATACTAATATCATAGTATCTGAAGATGATGTAACTGACACTGAGGAATTACTGAATTTTCTAACTTCAGTtggagaagaaaagaaaaaacaagaagacAAATTGGCGGAAGAGTTAAATTGTTTGAATGAAGATATTAAGGAGGTAGAAAGAAACCATTCATATGGGACTGATTCAGTATTTCATTTGACACAATTGAACTATCTACATTTTCAAGATTCATCAAGTACAGATATTAGAAGATATTTTCCAAGTTCATTTGTTGACGAAGCAAGATTTATGAGTAATATAAATCAGCTCGAGACTAGTTACTTTTCGATGAGATTCCAAGGCCTGCTCAAGGATGATCCAGCTGTTAAAAGCACCGATAAAAGTGTGATGGAAAATAGATTGAGATTGCCTCATTTAGCGAATGTTAGTAATGAGGTAAAGAGAATTCAAGGTTCTATTGGTAGTCTAGGACCCTTCTTTGATGGTATATGCAAATTTGCTCGTTACAGCAAGTTCGAAGAGCGCGGAACATTGAGAAATAGTGATCTGCTTAGTTCTGCCAATGTGATATGTGCCTTAAGTTTTGACCGCGACGAGGATTATATTGCAGCAGGTggaatttcaaagaaaataaagatattTGACCTCAACGCTGCTTCAAGTGATTCTGTAGACATTCAGTATCCTGTTGTTGAGATGACAAACAAATCAAAGCTTAGTTGTGTGTGCTGGAACAGTTATATAAAAAACCATCTCGCGTCTACTGATTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACCGGTCAGCCACTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTGTATCTGACCCGAAAATGTTTGCCAGTGGAAGCGATGATTGCTCTATCAAACTGTGGAATATCAGCGAGAGAAATTCTATAGGAACCATATTGAGCCCTGCAAATGTATGTTGTGTTCAATTCTCTGAATACTCgtcaaatcttttatttttcgGATCGGCTGATTACAAGGTCTACGGTTATGATCTTCGTAACACTAAAATCCCTTGGTGTACATTAGCCGGTCATGGAAAAGCGGTTAgctatataaaatttatagatGCACAAACAGTTGTGTCTGCTTCCACTGATAACTCTTTGAAGCTATGGGACCTAAAGAAAACTAGCTCAGCTGAGTTATCATCTGATGCTTGTGACTTAACCTTTAGAGGTCATAGTAATGAAAAGAATTTTGTTGGTTTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCTCTGCCGGTGCCAATTGCTTCTCACAGATTCGAGTCAAACGATCCCATTTCTGGTCATTCAAATAGTTTTGACAACAATGGACAGTTTGTTTCTAGTGTCTGTTGGAGAAAGAAGTCTAACATGCTTGTTGCAGCCAACTCAGTTGGAATTATAAAACTACTGAAGATGGCGTGA 2709 0.3503 MTANNDRGNDQEHKRKINDPLPRSCIPRNVTSLAGSGPTSTSFCSTTDPKHIVEKLHVRNYKNLNHQLAFESKYSNSLIRDNPLKVKGGLKGKGIDSRKNLKLNHQPDKGFVNMKGKEIIYKDLGNVVSGAECFNDELNLRVWMKSESRKMKKSERLYLFKQILELVDFAHSQGFVLQDLKPSCFALLPLNKIKYIGSYGQEVFDDEKSCFTLFKSCLKAIMTCNVTKKMPWEHDTCGCQSLNGTKKQKLCEETTSLKQQHHFNCSHGCDTNMFMESSLCLDGSSYQHGFAEEKQFVSETIQLEEKWYSCPEVLNDGTNTFSSNVYSLGVLVFELLCNIESLEAHSTVMFDMRHRILPPKFLSQNAKEAGFCLWLLHPEPSSRPNTKMILESEFIRELAELDSENTNIIVSEDDVTDTEELLNFLTSVGEEKKKQEDKLAEELNCLNEDIKEVERNHSYGTDSVFHLTQLNYLHFQDSSSTDIRRYFPSSFVDEARFMSNINQLETSYFSMRFQGLLKDDPAVKSTDKSVMENRLRLPHLANVSNEVKRIQGSIGSLGPFFDGICKFARYSKFEERGTLRNSDLLSSANVICALSFDRDEDYIAAGGISKKIKIFDLNAASSDSVDIQYPVVEMTNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRAWSVHFSVSDPKMFASGSDDCSIKLWNISERNSIGTILSPANVCCVQFSEYSSNLLFFGSADYKVYGYDLRNTKIPWCTLAGHGKAVSYIKFIDAQTVVSASTDNSLKLWDLKKTSSAELSSDACDLTFRGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIASHRFESNDPISGHSNSFDNNGQFVSSVCWRKKSNMLVAANSVGIIKLLKMA 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00961 902 PANTHER LIGASE COP1, PUTATIVE-RELATED 25 76 - -
Tsu08g00961 902 PANTHER LIGASE COP1, PUTATIVE-RELATED 134 901 - -
Tsu08g00961 902 Gene3D Transferase(Phosphotransferase) domain 1 136 407 - -
Tsu08g00961 902 SUPERFAMILY WD40 repeat-like 589 899 IPR036322 GO:0005515
Tsu08g00961 902 MobiDBLite consensus disorder prediction 1 42 - -
Tsu08g00961 902 PRINTS G protein beta WD-40 repeat signature 653 667 IPR020472 -
Tsu08g00961 902 PRINTS G protein beta WD-40 repeat signature 696 710 IPR020472 -
Tsu08g00961 902 PRINTS G protein beta WD-40 repeat signature 780 794 IPR020472 -
Tsu08g00961 902 PANTHER PROTEIN SPA1-RELATED 2 25 76 IPR044630 GO:0009640
Tsu08g00961 902 PANTHER PROTEIN SPA1-RELATED 2 134 901 IPR044630 GO:0009640
Tsu08g00961 902 SMART WD40_4 854 900 IPR001680 GO:0005515
Tsu08g00961 902 SMART WD40_4 804 843 IPR001680 GO:0005515
Tsu08g00961 902 SMART WD40_4 669 709 IPR001680 GO:0005515
Tsu08g00961 902 SMART WD40_4 712 751 IPR001680 GO:0005515
Tsu08g00961 902 SMART WD40_4 581 616 IPR001680 GO:0005515
Tsu08g00961 902 SMART WD40_4 755 793 IPR001680 GO:0005515
Tsu08g00961 902 SMART WD40_4 627 666 IPR001680 GO:0005515
Tsu08g00961 902 SMART serkin_6 28 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00961 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 676 718 IPR001680 GO:0005515
Tsu08g00961 902 Coils Coil 429 456 - -
Tsu08g00961 902 SUPERFAMILY Protein kinase-like (PK-like) 138 404 IPR011009 -
Tsu08g00961 902 ProSitePatterns Trp-Asp (WD) repeats signature. 780 794 IPR019775 -
Tsu08g00961 902 Pfam WD domain, G-beta repeat 761 793 IPR001680 GO:0005515
Tsu08g00961 902 Pfam WD domain, G-beta repeat 671 709 IPR001680 GO:0005515
Tsu08g00961 902 MobiDBLite consensus disorder prediction 7 21 - -
Tsu08g00961 902 Gene3D - 561 902 IPR015943 GO:0005515
Tsu08g00961 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 762 795 - -
Tsu08g00961 902 ProSiteProfiles Protein kinase domain profile. 28 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00961 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 762 802 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00961 Tsu-Chr8 10596003 10600802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00961 673 842 Miscellaneous Gene Families AT5G08390 23.837 1.00e-07 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Tsu08g00961 WD40 0.0072 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00961 K16240 - gmx:100802144 1128.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00961 08 10596003 10600802 Tsu08g00961 08 10596003 10600802 ECH