Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00950 atggGAGAAAATAATAAGTGTGAAGAAATTGGACTCGTTGGTGAATTAATGCAAGGAGAGGAGCTAACAAAGAAGCTTTATGATCAACTCTCTccattatcatcatcaccatcatcatcaacatcatcatcatcctcttcatcatcaacaacaccaTCACATGTAGCTAATGGAGTCTTAATTGACAAAATACTTTTGTCCTTTGAGAAAGCACTAACAATGGTGAAGGGTAATGTTGGAAAAATTAAGACAAACAATGTTAACAAGATTGATTCTCATTGTTCAAATGGAAGTCCCAAAAGTGTGGTCCAAGATTCAGTTTTCAAGCAAAAACATGTCTCAAAGAAAAGAAAAACCAATCCTAAGTGGACAGAACAAGTTAAGGTGTATTTAGGAACAGCCCCTGAAGGGACTGTGGAGGATGGTTATAGCTGGAGAAAGTATGGACAAAAGGATATTCATGGAGCCAAGTTTCCAAGAGGATATTATAGATGCACACATAGAAATTCACAAGGTTGTCTAGCTACTAAACAAGTGCAAAAATCAgaagaagattcaatggtaTATGAGATAACCTACAAAGGAAGACACACATGCACTCAATCTAGTCATTTGAACAAGGCAAACCCAtcaaaaaagttgaaatttggacaaaataaatcacaaaccAATCAAAAAATTCAACCACAAGAAGAGAAAATTCAACCATCTCAAGagaaaactttttcttttgataacaAGGAGGAAATATTcccatcatttaatttttcCTCTCCATCAGTAGGATCTGAAAATGAAGATAACAATATGTTTTTAGAGACCATGATTAAAAACAATTTCATGGAAAATGAGAACAACAATATATTCTCAGAATCAAACAATTTCTGCTTGTCACTATTGGATTTGGACAACATTGGACTAAGCCCAAGTGATGAGTCTGATATTATGGAGATGATTTCAGGCCCAAATTCAGTTGTCAATTCCCCAAtggattttgatttatttaatgaCATAAATTGTGATATGGATTTCTCTATAGGACAGTTTATGTGA 1053 0.2906 MGENNKCEEIGLVGELMQGEELTKKLYDQLSPLSSSPSSSTSSSSSSSSTTPSHVANGVLIDKILLSFEKALTMVKGNVGKIKTNNVNKIDSHCSNGSPKSVVQDSVFKQKHVSKKRKTNPKWTEQVKVYLGTAPEGTVEDGYSWRKYGQKDIHGAKFPRGYYRCTHRNSQGCLATKQVQKSEEDSMVYEITYKGRHTCTQSSHLNKANPSKKLKFGQNKSQTNQKIQPQEEKIQPSQEKTFSFDNKEEIFPSFNFSSPSVGSENEDNNMFLETMIKNNFMENENNNIFSESNNFCLSLLDLDNIGLSPSDESDIMEMISGPNSVVNSPMDFDLFNDINCDMDFSIGQFM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00950 350 MobiDBLite consensus disorder prediction 201 238 - -
Tsu08g00950 350 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 1 345 - -
Tsu08g00950 350 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 345 IPR044810 GO:0003700
Tsu08g00950 350 ProSiteProfiles WRKY domain profile. 134 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g00950 350 MobiDBLite consensus disorder prediction 27 53 - -
Tsu08g00950 350 SUPERFAMILY WRKY DNA-binding domain 137 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu08g00950 350 Gene3D WRKY domain 126 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu08g00950 350 Pfam WRKY DNA -binding domain 140 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g00950 350 MobiDBLite consensus disorder prediction 28 53 - -
Tsu08g00950 350 SMART WRKY_cls 139 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00950 Tsu-Chr8 10435347 10438737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00950 8 344 WRKY Transcription Factor Family AT2G46400 32.764 3.43e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu08g00950 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00950 - - aprc:113849885 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00950 08 10435347 10438737 Tsu08g00950 08 10435347 10438737 ECH
Tsu02g00381 02 3182521 3185062 Tsu08g00950 08 10435347 10438737 ECH