Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00940 ATGAGCCCTGCTGTTCAGACTGTGGCGGCTGACAACAACGGCGTGTTCAAGTCACacaagaagaataagaagaacaagaagaagaatgttaATGTTAATACTCCTTCTTCATTAGGGAAAAGAAAAGCTGATGATGATTTCACAAAGGAAAAACCTAATAAGAAAAAGTCCAAAAAAAAGTCTCAGTTGACCACTGATAgtgataatgatgataataaagtTGTAGCAGTAGAAAATGGTGTTGCTGATGGTGGTAGTTCTGGAATTATTGGAGGAGATTCTTATTTAAGTGATTCCAGATTTGACCAGTGTTCAGTCTCTCCACTGTCATTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACCATTGTTCAGGAGGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTGGCTAAGGCTAAAACAGGAACGGGAAAAACAGTAGCCTTTTTGctTCCATCAATTGAAGCTGTTGTGAAGTCTCCACCAAGTGATCGTAATCAACTCCGTAAACCAATTCTTGTTCTTATCATATGCCCAACACGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCGCTAAACTGCTCAAGTATCATCCCACCATTGGTGCTCAAGCTGTGATTGGAGGAACAAATCTTAGTGTAGAACAGAAACGAATTCAGAAAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCACATTAATAGTACTGATGGTTTTCCTTCTAGGCTTATGGGGGTTAAGACTTTGGTGCTTGATGAAGCTGATCATTTACTAGATATGGGATTTCGCAAAGATATTGATAAAATAATTGCTGCAGTTCCCAAACAACGACAAACACTCATGTTTTCTGCAACCATTCCGGACGGGGTGCATCAAGTCTGTAAAATTGCTTTGAAAAAGgattttgaatttattaatACAGTTCAGGAGGGTTCTGAGGAGACACATGCAAAGGTCCGCCAGATGCATTTAATTGCCCCACTAGACAAACATTTCTCTTTACTCTATGTTATTCTGAAGGAGCACATTGCTGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAagacttgttgctgatctcctTGGGAGGTTGAACTTGAATGTGAGAGAAATTCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCCGATGAATTCCGGAAGTCAAAGCGTCTCATCCTAGTTACTTCGGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTTCTCTTGTTGTACAGGTTGGCCTACCAGCTGATAAGCAACAGTACATACATCGACTAGGTAGAACAGGGCGAAAAGGAAAAGAAGGCCAAGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTTTTAGATTCGGCAAAAGATTTGCCTATTGGGAAAGCTCCAGTACCTTCGGTTGATCCTGAGACTAAGAAAAAGGTGGATAGGGCTATATCCAATGTCGAGATGGATAATAAAGAAAGAGCATATCAAGCATGGCTTGGTTACTACAATTCCAACAAGAAAGTAGGGAAAGATAAGCGTAAGTTAGTGGAGCTTGCTAACGAGTTCAGTCGAAGCATGGGGCTTGATACCCCTCCAGCTGTCGCTAGTCTTGTCCTTGGCAAGATGGGTCTTAAAAACGTCCCTGGTTTACGTTCCAAATAG 1704 0.3961 MSPAVQTVAADNNGVFKSHKKNKKNKKKNVNVNTPSSLGKRKADDDFTKEKPNKKKSKKKSQLTTDSDNDDNKVVAVENGVADGGSSGIIGGDSYLSDSRFDQCSVSPLSLKGIKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEAVVKSPPSDRNQLRKPILVLIICPTRELACQAAAEAAKLLKYHPTIGAQAVIGGTNLSVEQKRIQKNPCQILVATPGRLRDHINSTDGFPSRLMGVKTLVLDEADHLLDMGFRKDIDKIIAAVPKQRQTLMFSATIPDGVHQVCKIALKKDFEFINTVQEGSEETHAKVRQMHLIAPLDKHFSLLYVILKEHIADDVDYKVLVFCTTAMVTRLVADLLGRLNLNVREIHSRKPQSYRTRVSDEFRKSKRLILVTSDVSARGVDYPDVSLVVQVGLPADKQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLDSAKDLPIGKAPVPSVDPETKKKVDRAISNVEMDNKERAYQAWLGYYNSNKKVGKDKRKLVELANEFSRSMGLDTPPAVASLVLGKMGLKNVPGLRSK 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00940 567 MobiDBLite consensus disorder prediction 1 72 - -
Tsu08g00940 567 SMART helicmild6 371 452 IPR001650 -
Tsu08g00940 567 CDD SF2_C_DEAD 328 461 - -
Tsu08g00940 567 Gene3D - 322 546 IPR027417 -
Tsu08g00940 567 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 67 565 - -
Tsu08g00940 567 Pfam DEAD/DEAH box helicase 125 300 IPR011545 GO:0003676|GO:0005524
Tsu08g00940 567 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Tsu08g00940 567 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 313 IPR014001 -
Tsu08g00940 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 467 IPR027417 -
Tsu08g00940 567 SMART ultradead3 118 331 IPR014001 -
Tsu08g00940 567 Gene3D - 16 314 IPR027417 -
Tsu08g00940 567 Pfam Helicase conserved C-terminal domain 350 452 IPR001650 -
Tsu08g00940 567 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 493 IPR001650 -
Tsu08g00940 567 PANTHER RNA HELICASE 67 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00940 Tsu-Chr8 10290324 10297109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00940 99 480 Eukaryotic Initiation Factors Gene Family AT3G19760 28.173 6.43e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00940 - - gmx:100795739 803.897