Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00939 ATGCCCACAAAAATCTTCTTATCACAACTTCGTCTTCTTCACTTTCAACCAATGAAACTTCACTCTTTACCTCTCTTCAAATTCTCTCACATTCCACTCCGAAACGCTGCGTTTCACCCTCGCCCTTTCTCCGTTAAACCAGACAGAATTAGGGCTTCTAAAAGCCTTGTTGACGACGAGGCTGAGCTTAGTAATTGGGTTGATGATTTGCGAACCGGTCGAGCTGAGACTATGAAACCTGCTCAGAGAGTGAGTTCTGGTCGTGATACGGGTGATAGAGACGGTGGGTTTCGGCCACGGAAAAGTAATGTTAGTAGGGGTTCTAATTCTGTGAAGAGAAAACCTTATGTGAATCCTAATTCGAAGAGAAGATTTGGATTGAGTagtgataatgatgatgaggaggaGGTGGTTGAAAGAGGGAAATTTAAGGGTAGTGGTGGTTCTGGAAGTATTGGTAGATTTCTTAGTGAAGATGAtgttgaaggagaagaagagagtgatgatgatgattatgatgatgatgaggaggaGATAGTTAAGAAAAGTAGAAATGTTTTGTTTGGTAAACAAAATGGGGTTTCAACAACTCCTAGACCTGCTTCATCTGGTGGAAGTGATTCTTATTTAAGTGATTCTAGATTCGATCGATGTTCAGTTTCACCATTATCATTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACACTTCCAGTAATTCTAaaagGTAAGGATGTCCTGGCCAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGcTTCCAGCCATTGAAGTTGTTGTGAAGTCTCCACCAGCTGATCGTGATCAAAGGCGGCCACCAATTTTTGTTCTTGTCATATGTCCCACTCGTGAGCTTGCATGTCAAGCTGCTGCCGAAGCCACTAAACTGCTTAAGTATCATCCTACCTTAGGTGTTCAAGTTGTGATCGGAGGAACAAGACTTGCTTTAGAACAGAAACGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACCCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTGCATCTAGGCTTATGGGGGTGAAAGCCCTGGTGCTTGATGAAGCTGATCATTTACTGGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCTGCAATCCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGGACGAGGTGCGTCAAGTCTGTCATGTTGCTTTGAAAAGGGATTTCGAATATATTAATACAGTTCAAGAGGGTTCTGAGGATACACATGCCCAGGTCCGCCAAATGCATTTAGTTGCACCATTAGACAAGCATTTCCATTTTCTCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAagacttgttgctgatctcctTGGGGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCTGACGAATTCCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCGGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTCGGCGTACCGGCTGATAGAGAACAGTATATACATCGATTAGGTAGAACAGGGAGAAGAGGAAAAGAAGGGCAGGGCATACTGCTATTAGCTCCTTGGGAAGAGTTCTTTTTAGCTACCGCAAAAGATTTGCCTATTGGGAAAGCTCCAGTACCTTTAGTCGATCCTGACACCAAGAAAAAGGTGGAAAGGGCTCTATCCAATGTGGAGATGAAGAATAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAACTCTAACAAGAAAGTGGGAAAAGATAAGTATAGGTTAGTCGAACTTGCAAATGAGTTCAGTCGATGCATGGGGCTCGATACCCCTCCAGCCATTCCTAAGCTTGTCCTCGGCAAGATGGGTCTTAAAAATGTCCCTGGTTTACGTTCCAAATAG 2046 0.4076 MPTKIFLSQLRLLHFQPMKLHSLPLFKFSHIPLRNAAFHPRPFSVKPDRIRASKSLVDDEAELSNWVDDLRTGRAETMKPAQRVSSGRDTGDRDGGFRPRKSNVSRGSNSVKRKPYVNPNSKRRFGLSSDNDDEEEVVERGKFKGSGGSGSIGRFLSEDDVEGEEESDDDDYDDDEEEIVKKSRNVLFGKQNGVSTTPRPASSGGSDSYLSDSRFDRCSVSPLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPAIEVVVKSPPADRDQRRPPIFVLVICPTRELACQAAAEATKLLKYHPTLGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAIPKQRQTLMFSATIPDEVRQVCHVALKRDFEYINTVQEGSEDTHAQVRQMHLVAPLDKHFHFLYAILKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGVPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLATAKDLPIGKAPVPLVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRCMGLDTPPAIPKLVLGKMGLKNVPGLRSK 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00939 681 MobiDBLite consensus disorder prediction 188 211 - -
Tsu08g00939 681 Gene3D - 173 428 IPR027417 -
Tsu08g00939 681 Gene3D - 437 659 IPR027417 -
Tsu08g00939 681 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 29 122 - -
Tsu08g00939 681 Pfam Helicase conserved C-terminal domain 458 566 IPR001650 -
Tsu08g00939 681 SMART ultradead3 232 445 IPR014001 -
Tsu08g00939 681 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 213 241 IPR014014 GO:0003724
Tsu08g00939 681 CDD SF2_C_DEAD 442 575 - -
Tsu08g00939 681 MobiDBLite consensus disorder prediction 73 211 - -
Tsu08g00939 681 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 181 679 - -
Tsu08g00939 681 SMART helicmild6 485 566 IPR001650 -
Tsu08g00939 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 581 IPR027417 -
Tsu08g00939 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 244 427 IPR014001 -
Tsu08g00939 681 PANTHER RNA HELICASE 29 122 - -
Tsu08g00939 681 MobiDBLite consensus disorder prediction 126 142 - -
Tsu08g00939 681 CDD DEADc_MSS116 220 429 - -
Tsu08g00939 681 MobiDBLite consensus disorder prediction 102 116 - -
Tsu08g00939 681 MobiDBLite consensus disorder prediction 159 176 - -
Tsu08g00939 681 Pfam DEAD/DEAH box helicase 238 415 IPR011545 GO:0003676|GO:0005524
Tsu08g00939 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 462 622 IPR001650 -
Tsu08g00939 681 PANTHER RNA HELICASE 181 679 - -
Tsu08g00939 681 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00939 Tsu-Chr8 10283588 10289188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00939 213 594 Eukaryotic Initiation Factors Gene Family AT3G19760 27.665 1.26e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00939 - - gmx:100795739 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00939 08 10283588 10289188 Tsu08g00939 08 10283588 10289188 ECH