Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00935 ATGACTCCAAAGGAAAAGAAATTTGTGAGATTTGAAGATTGGAAGTCAGAGTCATCCTCTTTTAATTTTTCACAATATGATTCTTCAATTGATGGATTTGAAataagaaaaccaaaatcaacTGTTACTACTacaaaaaacaatgaaacattGAACAAACAATCTCCTAGGTGTAGTGTTCTTGATCCACAAGGTCCACTACTTCAAAAATGGAACAAAATCTTTGTAATAACATGTGTCATGGCAGTATCTATGGATCCATTGTTCTTTTACATCCCTGAGATTGATGACAAAAAGAAATGTCTTAATTTGAATGGAACATTGAAGATTACAGCTAGTGTTCTTCGCACGTTTTTCGATCTTTTCTACATTCTCCgtattgtctttcagtttcgaACCGGATTTATTGCTCCTTCTTCGCGCGTTTTCGGTAGGGGTGAACCGGTTGATGATCCTTTTGCTATAGCAATGAGATACTTAAGCTCTCATTTCATCATTGACATTCTATCAATTCTTCCACTTCCTCAGATGGTGATTTTAGCTATGATTCCAATTCGACAATGCTCAGTTCCTTATATAGCAAAGGATTGGTTGAAGTATACAATAATAACACAATATGCGCCGAGACTTCTGCGAATCTATCCATTGTTCAAAGAAGTAACAAGCACTTCTGGTATATTAACTGAAACAGCTTGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCTTTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGGTGTTGGCGCAGACGATTGAAGAATACTACATTCTTTGATGATTCCTATCTGAGCTGTGGACGAGTCAATCCGATACTTTTTTCGATTCTCAACAATTCTACTACTTGTCCCTACAAAGATCCTGATGATATCCTTGATccaacaattttcaattttggaaTATATATTGATGCGCTAACGTCGCGTGTGGTAgagttgaatacaaattttcatCATAAGTTCTTCTACTGCTTTTGGTGGGGCTTGCGCAATTTAAGTTCTGTTGGGCAGAATCTGAAGACAAGCACTTACATTGGGGAGATAATCTTTGCTATCTTCATCGCCGTCTTTGGATTAGTTCTATTCGCATTACTTATAGGAAACATGCAGAAATACCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCGGAGTACTTGAAGGAAAGAATTCGACGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTCGAAGAGGAGACTTTGATTCGTAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCGATTTTCGGGAGCATGGATGAAAAGTTGTTGGATGCAATGTGTGATAAACTGAAACCAGTCCTTTATACCGAGAAAAGTTGCGTTGTTCGTGAAGGTGATCCGGTGGACGAAATGCTCTTCATCATGCGGGGAAGACTTTTTATTGCCACAACAAATGGTGGAAGAACTGGTTTCTTTAACTCGTCTAAGCTTAAGGCTGGTGATTTTTGTGGAGAGGAGCTTCTAACTTGGGCCTTGGATCCAAACAGCCCCTCGAACTTACCTATTTCGACTAGTACTGTGGAAACTATTACAGAAGTTGAAGCTTTTGCTCTCATGCATGATGACTTGAAGATTGTTGCTTCTCAATTTCGCCGTCTTATTAACAGAAAACAACTCCAACACACTTTCAGGTTCTATTCCTTGCAATGGAGGTTATGGGGAGCTCGGTTCATACAAGTAGTTTGGCgtagaaatagagaaaaaaggGCTCAGAAATTGTTGCGTGAAGCggaagaaaaacaacaaaacatttCTGAAAATGAAGAAGGGACTTCACCAAGCTTTGCTTCTTCTGTATATGTACAAAGGTTTGCATCCAATGCATTAAGGAACTTAAGAAGTGGCAAAAGAGTGCCACAGACAAAGAGATTGCTACCACTCTTGCCTAAGAAACCAGCTGAACCAGATTTCATTACTCATAAAAACTAG 2091 0.3659 MTPKEKKFVRFEDWKSESSSFNFSQYDSSIDGFEIRKPKSTVTTTKNNETLNKQSPRCSVLDPQGPLLQKWNKIFVITCVMAVSMDPLFFYIPEIDDKKKCLNLNGTLKITASVLRTFFDLFYILRIVFQFRTGFIAPSSRVFGRGEPVDDPFAIAMRYLSSHFIIDILSILPLPQMVILAMIPIRQCSVPYIAKDWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRRLKNTTFFDDSYLSCGRVNPILFSILNNSTTCPYKDPDDILDPTIFNFGIYIDALTSRVVELNTNFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPEYLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPIFGSMDEKLLDAMCDKLKPVLYTEKSCVVREGDPVDEMLFIMRGRLFIATTNGGRTGFFNSSKLKAGDFCGEELLTWALDPNSPSNLPISTSTVETITEVEAFALMHDDLKIVASQFRRLINRKQLQHTFRFYSLQWRLWGARFIQVVWRRNREKRAQKLLREAEEKQQNISENEEGTSPSFASSVYVQRFASNALRNLRSGKRVPQTKRLLPLLPKKPAEPDFITHKN 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00935 696 Gene3D - 73 392 - -
Tsu08g00935 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 694 - -
Tsu08g00935 696 SUPERFAMILY cAMP-binding domain-like 397 586 IPR018490 -
Tsu08g00935 696 Gene3D Jelly Rolls 466 586 IPR014710 -
Tsu08g00935 696 CDD CAP_ED 468 600 IPR000595 -
Tsu08g00935 696 Pfam Ion transport protein 71 396 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu08g00935 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 694 - -
Tsu08g00935 696 Gene3D Helix hairpin bin 395 459 - -
Tsu08g00935 696 SMART cnmp_10 468 599 IPR000595 -
Tsu08g00935 696 ProSiteProfiles cAMP/cGMP binding motif profile. 468 551 IPR000595 -
Tsu08g00935 696 SUPERFAMILY Voltage-gated potassium channels 62 390 - -
Tsu08g00935 696 Coils Coil 617 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00935 Tsu-Chr8 10216644 10221726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00935 9 691 Ion Channels AT4G01010 61.007 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00935 K05391 - gmx:100795201 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00935 08 10216644 10221726 Tsu08g00935 08 10216644 10221726 ECH
Tsu07g04682 07 51299756 51304761 Tsu08g00935 08 10216644 10221726 PCT