Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00932 ATGGGCATCTTGAAGGTCCTTTTTTACTTAATATTTCCTGTCATACATGCCTTTAACGATTGCCCAGTTTCGTTATGTGGTAACTTTAGTTTACCTATTCGTTTCCCTTTTACACTAGAAGGTGAGCAATCTCCTTATTGTGGTTACCCCGGTTTCAACTTAATTTGTTCAAATCAAAGAAATTCAGTTCTAGAACTTCCTTATTCTGGCGAATTCTATGTACGCAACATCAACTATCTCACACAACAGATACAACTCTATGATCCTGATAATTGTCTTCCCAAACGTCTTCTAAGTCTcaatttttcaaattctccttTCATTGCTACTTTCAGTCGTGACTACACCTTTTTAAGCTGTTCATCTCAGAAGAATATAGGGTCACAATTCATTCCCATTGATTGTCTTAGTAATTCAACATATTTTGTATCAGCTATTCCTTCGGTTAACTTGGCCAATTCAATTCCTGGGTCTTGTTCTGTTATCAAAAGGCTTTTAGTTCCGGTAGCAAGACAAGAACGATTCGGAGAAAATATCAAAGATAATCTTAGTGCAGATCTTCAATTAACATGGGATAAACCTGACTGCAGTTATTGTGAAACACATGGGCTAATGTGTGGATTAGAAAGCGTTTACAACAATCAAGTTGTCTGTATGTCTGATTACCAAGCAGGTACATCACGACAAGGACTTAAAATTTTCAGAATCATAGCATTATGTATTACTGGACCAGCTCTAATCTTTGTTATGTTAATGGCAACTTGTGTGTGCTACAATGATAGAATAGCCAACATTACCAGAAATGCTGCTTCTCGGTCAGCACCAGCTGCAATATCACCACAACCTGACGTCATAATAGCTACAGGTTTAGATGAATCGACAATTGAATCTTATGAGAAAGTAGTTCTTGGGGATAGTCGACGCGTACCTGGACCAAACGACGGATGTTGTTGGATATGCTTATCAGAATACAATAGTAAAGAGACAATAAGAAGTATTCCAGAATGCAAACATTGTTTTCATGCTGATTGTATTGATGAGTGGCTTCGTATGAATGTTACATGCCCTGTTTGTCGTAATTCTCCTGCTCCTTCTCCTCTTAATGTTGCTTCTAGTGATGTTTGA 1125 0.3707 MGILKVLFYLIFPVIHAFNDCPVSLCGNFSLPIRFPFTLEGEQSPYCGYPGFNLICSNQRNSVLELPYSGEFYVRNINYLTQQIQLYDPDNCLPKRLLSLNFSNSPFIATFSRDYTFLSCSSQKNIGSQFIPIDCLSNSTYFVSAIPSVNLANSIPGSCSVIKRLLVPVARQERFGENIKDNLSADLQLTWDKPDCSYCETHGLMCGLESVYNNQVVCMSDYQAGTSRQGLKIFRIIALCITGPALIFVMLMATCVCYNDRIANITRNAASRSAPAAISPQPDVIIATGLDESTIESYEKVVLGDSRRVPGPNDGCCWICLSEYNSKETIRSIPECKHCFHADCIDEWLRMNVTCPVCRNSPAPSPLNVASSDV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00932 374 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Tsu08g00932 374 SUPERFAMILY RING/U-box 311 362 - -
Tsu08g00932 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 364 IPR013083 -
Tsu08g00932 374 Pfam Wall-associated receptor kinase C-terminal 155 219 IPR032872 -
Tsu08g00932 374 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 7 368 - -
Tsu08g00932 374 SMART ring_2 317 358 IPR001841 -
Tsu08g00932 374 Pfam Wall-associated receptor kinase galacturonan-binding 21 88 IPR025287 GO:0030247
Tsu08g00932 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 368 - -
Tsu08g00932 374 Pfam Ring finger domain 317 359 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00932 Tsu-Chr8 10206041 10208204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00932 26 364 C3H Transcription Factor Family AT2G25410 42.982 3.96e-92 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00932 - - aprc:113851081 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00932 08 10206041 10208204 Tsu08g00932 08 10206041 10208204 ECH
Tsu07g04684 07 51310522 51311986 Tsu08g00932 08 10206041 10208204 PCT