Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00930 ATGGTAATTAAGCGTGCTGTGAAATCCGAAATGCCGAAATTGAAACGGTGTAAATTGGATGAACCTGATTCTGAAGGTCCTGAAGGGTGTTCTGGGATTCAGAAGAAGCGTATGGTTAACGAGTTTTACTCGATAGATGATGCTGATAATTTTAGCAGTGGGAGCAGTGAAGTAACGCATTGTGATGTTGAGTTTAATTCACATTCTATATTGTTGAATGGTAAAACTGTGAAGGAACGGGGTTCAGTGGAGGCTCGGCCTACTTTATTGCGATCCTCACGTGGCCGGCTTCCGATGCTTCCGTCGAGGTTTAATGACTCTGTTGTTCTTGATGCGTGGAAGAAACGAGGAGTAAAAACGGAGGATGGAGATGGTGATTCCAGCTTTGAAGATGATAGGAGTTATGTTGAGCATGGTAAGGTTAAGAATAGTGATGtgaattgtttgaaaaattattCTGTGTGTTATCCATGTGCTGAAGTGAAGGTTGATGAAAGGGAGGGTAGTGATTTGTCTAGTGTGGGTAGAAAAACGATGAAGACTGATAGTAATGCTTCTGGTTCTGGTCTTAGCTCTGAGGGTATAGAGCAGAAGACTTATGGGAATGTTGGAAAGAGAAAAGAGGTTTATAGGCCAGAGGATTTTGCTTTGGGTGAAATTGTTTGGGCAAAATGCGGCAAGAGATATCCGGCTTGGCCTGCTGTGGTGATTGATCCCATGTCACAGGCTCCTTATTCCGTCTTGAACTGTTTTGTTCCTGATGCGCTTTGTGTGATGTTTTTCGGTTATTCAAAAAATGGGACTCGGGATTATGCATGGGTGAAGCAGGGAATGATATTCCCATTCTCGGAATTCTTCAATAGATTTCAGGGGCAGACCCAGTTGTACAAGAGCAAACCGAGTGAATTCCAGATGGCGCTGGAGGAGGCAAAGTTGGCAGAAGATGGTATTCTGGAATCACATTTGGGAGCGGAGGAAGTGACCGATGTAGAAGCTCATCCTCCTGATAGACTTGAAGAGGTCTTAATTTCAAATATTGATCAAGAATATTATTGTCAGGATCAgGATACTAGATGTTGTGCTACCTGTGGTTTGATGTTTCCATGCAAAACCATGAAGAAGGTTAAGGGTTCAAGTTATGCACTCCAGTTTCAATGCAAACTTTGTGCCAAGttactaaaatcaaaacaatactGTGGAATTTGCAAAAAGATTTGGCACCATTCAGACGGTGGAAATTGGGTATGTTGTGATGGTTGCAATGTATGGGTGCATGCTGAGTGCGACAGAATTTCTACCGAACATTTCAAGGATCTGGAAAATACCGATTACTATTGTCCAGATTGCAAGGAAAGAATCAATCGTAAATTACCGGAATCACAAACATGCAAGTCAAAAATCAAATCAGTGGAGAATAGCCAAAATGGCGTGGTACCTGAGAAGGTAACGGTGGTGTGCAATGGAATTGAAGGAGTTTACTTCCCTAAGCTTCATTTaaTTATGTGCAAGTGTATCTCTTGTGGTTCAAGGAAGCAGACACCGAGTGAATGGGAACGGCATACTGGAAGCAGAGCCAAAAAATGGAAATACAGTGTGAAAGTGAAAAGCACAATGCTACCACTTGAAAAATGGCTCACGGAGCACATTTCACAAGATGGAATTCCCCGGGAATTAGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAGTATGAGCCAGTTCATGCAAAATGGACGACGGAAAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGACGATAACAATATGATTATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGTGTAAACAATGTTCAAGATTTTACTTCTTGGGTCTGTAGAGTATGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCAACATGAAGTTGTTTTCCAAGACCCTTTGGCCATGGAACCTGCTGTTGGAATTCTAAGAATTCCTCCTAATTCCTTTGTGAAGGTTTGTGTAATTTGTAAACAAAGCCATGGTTCTTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTAATGTGCGCATCAAGAGCTGGGTATACCATGGAATTGCATGTCATGGAGAAGAATGGGACTCCAATAACAAAGAAGCTAATATACTGCGCAGTTCATAGAGTCCCAAGTCCAGATTCTGTAATGGTTACACATTCATCTCTGGGGATTTTCTCTCCCAGAACATTGACTCAAAATCACAAGGGATATTTCCGGGGATCAAGGCTTGTTTCATCAAAAAATAGAGAGCTCAATATATTTTCAACCACTGAAAATGATACGGTCGATCCATTTTCTGCGGCCAGATGTCGTGTGTACCAGAGGTCTCGTAATAAGAAAGCTGATGTGCCAATAATTCACTTGCTGAGGGGACCCAGCCTTCACTCTTTAGGTGAAATAACTCAATTGAACAACTATGAGGATGCTAAAGTTTCTAAAGTATTTCCTTCTTTCAAGGAACGTCTTCACGATCTGCAGCAAACTGAAAAACTCAGAATTTGCTTCGGAAAGTCGGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGATATGGTTGTTGAGTATCGCGGAGAGCAGGTAAGGCGTAGTGTCTCCGATCTGAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTACTTGTTCAAGATCAGTGAGGAAGTAGTCATTGATTCAACACACAAGGGCAATATAGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCTATGCAAGGATTTTGAGTTTGGGCGGCAATCAACAGAACCGGATTGTTCTTATTGCCAAAACCAACGTTTCTGCTGGTCAAGAACTAACGTATGATTACTTGTTCGATCCAACTGAGCCGGAAGAACAGAAAGTTCCCTGCCTTTGCAGAGCACCGGAATGTAGAAAATTTATGAACTAG 3048 0.4173 MVIKRAVKSEMPKLKRCKLDEPDSEGPEGCSGIQKKRMVNEFYSIDDADNFSSGSSEVTHCDVEFNSHSILLNGKTVKERGSVEARPTLLRSSRGRLPMLPSRFNDSVVLDAWKKRGVKTEDGDGDSSFEDDRSYVEHGKVKNSDVNCLKNYSVCYPCAEVKVDEREGSDLSSVGRKTMKTDSNASGSGLSSEGIEQKTYGNVGKRKEVYRPEDFALGEIVWAKCGKRYPAWPAVVIDPMSQAPYSVLNCFVPDALCVMFFGYSKNGTRDYAWVKQGMIFPFSEFFNRFQGQTQLYKSKPSEFQMALEEAKLAEDGILESHLGAEEVTDVEAHPPDRLEEVLISNIDQEYYCQDQDTRCCATCGLMFPCKTMKKVKGSSYALQFQCKLCAKLLKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDRISTEHFKDLENTDYYCPDCKERINRKLPESQTCKSKIKSVENSQNGVVPEKVTVVCNGIEGVYFPKLHLIMCKCISCGSRKQTPSEWERHTGSRAKKWKYSVKVKSTMLPLEKWLTEHISQDGIPRELDQQQVLAFLQEKYEPVHAKWTTERCAVCRWVEDWDDNNMIICNRCQIAVHQECYGVNNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQHEVVFQDPLAMEPAVGILRIPPNSFVKVCVICKQSHGSCTSCCKCATYFHVMCASRAGYTMELHVMEKNGTPITKKLIYCAVHRVPSPDSVMVTHSSLGIFSPRTLTQNHKGYFRGSRLVSSKNRELNIFSTTENDTVDPFSAARCRVYQRSRNKKADVPIIHLLRGPSLHSLGEITQLNNYEDAKVSKVFPSFKERLHDLQQTEKLRICFGKSGIHGWGLFARRDIQEGDMVVEYRGEQVRRSVSDLREAKYRSEGKDCYLFKISEEVVIDSTHKGNIARLINHSCMPNCYARILSLGGNQQNRIVLIAKTNVSAGQELTYDYLFDPTEPEEQKVPCLCRAPECRKFMN 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00930 1015 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1015 IPR025780 -
Tsu08g00930 1015 Pfam PHD-zinc-finger like domain 636 748 - -
Tsu08g00930 1015 ProSiteProfiles Extended PHD (ePHD) domain profile. 634 749 IPR034732 -
Tsu08g00930 1015 Gene3D - 475 556 IPR010919 -
Tsu08g00930 1015 MobiDBLite consensus disorder prediction 169 194 - -
Tsu08g00930 1015 Pfam PHD-finger 595 629 - -
Tsu08g00930 1015 ProSiteProfiles PWWP domain profile. 217 285 IPR000313 -
Tsu08g00930 1015 SUPERFAMILY SET domain 866 1012 IPR046341 -
Tsu08g00930 1015 CDD PHD_ATX3_4_5_like 582 628 IPR042011 -
Tsu08g00930 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 456 IPR013083 -
Tsu08g00930 1015 SUPERFAMILY SAND domain-like 480 540 IPR010919 -
Tsu08g00930 1015 SUPERFAMILY FYVE/PHD zinc finger 580 645 IPR011011 -
Tsu08g00930 1015 SMART PHD_3 582 629 IPR001965 -
Tsu08g00930 1015 SMART PHD_3 398 450 IPR001965 -
Tsu08g00930 1015 SMART PHD_3 693 749 IPR001965 -
Tsu08g00930 1015 Gene3D SET domain 841 1015 IPR046341 -
Tsu08g00930 1015 SMART PostSET_3 999 1015 IPR003616 -
Tsu08g00930 1015 Pfam PHD-finger 398 451 IPR019787 -
Tsu08g00930 1015 SUPERFAMILY Tudor/PWWP/MBT 208 328 - -
Tsu08g00930 1015 ProSiteProfiles Zinc finger PHD-type profile. 396 452 IPR019787 -
Tsu08g00930 1015 CDD PHD_TCF19_like 399 449 - -
Tsu08g00930 1015 ProSiteProfiles Zinc finger PHD-type profile. 580 631 IPR019787 -
Tsu08g00930 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 750 IPR013083 -
Tsu08g00930 1015 MobiDBLite consensus disorder prediction 174 194 - -
Tsu08g00930 1015 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 1015 - -
Tsu08g00930 1015 CDD SET_SETD1-like 861 1011 - -
Tsu08g00930 1015 SMART PWWP_4 215 283 IPR000313 -
Tsu08g00930 1015 Gene3D - 208 317 - -
Tsu08g00930 1015 ProSiteProfiles SET domain profile. 872 990 IPR001214 GO:0005515
Tsu08g00930 1015 Pfam PWWP domain 218 313 IPR000313 -
Tsu08g00930 1015 PANTHER PHD FINGER PROTEINS 1 1015 - -
Tsu08g00930 1015 SUPERFAMILY FYVE/PHD zinc finger 395 456 IPR011011 -
Tsu08g00930 1015 SMART set_7 872 996 IPR001214 GO:0005515
Tsu08g00930 1015 Pfam SET domain 883 989 IPR001214 GO:0005515
Tsu08g00930 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 577 631 IPR013083 -
Tsu08g00930 1015 ProSitePatterns Zinc finger PHD-type signature. 583 628 IPR019786 -
Tsu08g00930 1015 ProSiteProfiles Post-SET domain profile. 999 1015 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00930 Tsu-Chr8 10189328 10198700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00930 583 735 C2H2 Transcription Factor Family AT3G14740 33.125 1.14e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu08g00930 zf-HC5HC2H_2 1.9e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00930 - - cam:101496041 1652.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00930 08 10189328 10198700 Tsu08g00930 08 10189328 10198700 ECH