Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00912 atggaatcaGATAGTACTGTATCTTCTATGATCACGATGGATGAAGATTTGCATCCACATCAattttcatcttcaacctctaaGCAACATAGTAATGGTACACCTACTTCTACTAGTGTTCATGAGCTTCTTGAATGTCCTGTTTGTACAAATTCAATGTACCCTCCAATTCATCAGtgTCACAATGGACATACCCTATGTTCGACTTGTAAGACAAGGGTGCACAACAGGTGCCCAACATGCAGACAAGAACTCGGCGATATTCGGTGTTTGGCATTGGAGAAGATAGCAGAATCACTCGAGCTTCCTTGCAGATACACCTCTATTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACACGAGTCCATTTGTAACTTCAGACCTTACAACTGCCCTTATGCTGGGTCAGACTGTTCTGTTCTCGGCGATATTTCACAGCTTGTTGCTCATTTAAGGGACGACCACAGAGTTGATATGCATTCTGGATGCACTTTTAATCACCGTTATGTCAAGTCAAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAACAGTCTTCCACTGTTTTGGACAATATTTTTGTCTGCATTTCGAAGCCTTTCAACTTGGAATGGCTCCAGTTTACATGGCATTCCTCCGCTTCATGGGCGATGAAAGAGATGCCAGGAGCTACAGCTATAGTCTTGAGGTAGGAGGAAGTGGACGCAAACTAATCTATGAGGGAAGTCCAAGGAGCATTAGAGATAGCCACAAGAAAGTTAGAGACAGTCATGATGGCCTCATTATATACCGGAACATGGCACTTTTCTTCTCCGGTGGAGATAGGAAAGAGCTGAAATTACGAGTAACGGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTTTGCATACCAAACTTGTGTAGCTAG 927 0.4175 MESDSTVSSMITMDEDLHPHQFSSSTSKQHSNGTPTSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYTSIGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVLGDISQLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDERDARSYSYSLEVGGSGRKLIYEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00912 308 CDD RING-HC_SIAHs 44 82 - -
Tsu08g00912 308 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 300 - -
Tsu08g00912 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 98 IPR013083 -
Tsu08g00912 308 SUPERFAMILY RING/U-box 34 85 - -
Tsu08g00912 308 Pfam Seven in absentia protein family 88 287 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu08g00912 308 ProSiteProfiles Zinc finger RING-type profile. 46 82 IPR001841 -
Tsu08g00912 308 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 158 287 IPR008974 GO:0005515
Tsu08g00912 308 ProSiteProfiles Zinc finger SIAH-type profile. 99 159 IPR013010 GO:0008270
Tsu08g00912 308 SUPERFAMILY TRAF domain-like 99 291 - -
Tsu08g00912 308 PANTHER UBIQUITIN LIGASE SINAT3 1 300 - -
Tsu08g00912 308 CDD Sina 160 288 - -
Tsu08g00912 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00912 Tsu-Chr8 10022650 10027516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00912 23 294 C3H Transcription Factor Family AT2G41980 76.103 6.78e-158 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00912 K04506 - gmx:100792687 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00912 08 10022650 10027516 Tsu08g00912 08 10022650 10027516 ECH