Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00910 ATGAAGATTGAAGTGGGTTTAGGAGGAAGTGGGTTAtggaaagaagatgaaaaagcTATGGTGGTTGAAGTTTTAGGTGTTAATGCATTTGATTTCTTAGTTACAAATTCAGTTTCAAATGAGAATCTTTTGATGGCAATTGGGAATGGTGAgaatcttcaaaacaagctttCTGATCTAGTTGAAAGATCCAACGTTTCAAATTTTAGTTGgaattatgcaattttttggCAAATTTCTCAGTCAAAATATGGTGATTGGGTTTTAGGTTGGGGTGATGGATGTTGTAGAGaaccaaaagaagaagaagaaaaagaaaattttggaATGAAAACTTTTCTTAATCATAACGTTGTTGagaatgaaaaacaacaaagatTAAGGAAAAGGGTGTTACAGAAGCTTCATACaacatttggtggttcagatgAAGACAATTATGCTTTTGGATTGGATCATGTTACTGATACTGAGATGTTTTTTCTTGCTTCaatgtatttttcttttcctaATGGACATGGTGGACCAGGTAAGTGTTTTGCATCTGGGAAGCATTTGTGGCTTTGTGATGCATTGAAATCAAATAGTTCTGATTATTGTGTTAGGTCTCATTTGGCTAAATCTGTTGGATTTCAAACTATTGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAATTGGGTTCTGTTAGAATGGTTGGTGAGAGCTTTGAATTGTTGCAAACTATTAAATCTGTGTTTTCATCACAGTCATCACTTTCTAGGGTTAATTCGATTTCATCGGTGGACGAAACGAGAGATGAGAATGCACCTTTTTCTAGTTTGAAAGTTGGGGAGATTATTAAGAACAATAATAGTTTTGGTAATCTTCATCGTCATCAGAATAATAATCATGGTAGAGTAGAGGGGATTGGTGTTCCGAAGATTTTCGGGCAGGATTTGAACTCGGCGACACATTTTCGGGAGAAACTTGCTATTAGGAAAATGGATGAGAGGCCATCATGGGGAGGCAGCCGTCCGAATGGGAATGGAATTAGTTTTCCTAACGGTGTTCATGGTTCGGGTTGGAGAGGTAGTCAAGTTTTGAGGCAGAATGTGCCTGCGGATGTTTTTTCTCCTAGGCCTCCTTCAACGAGCAATGCGCTCGAGCTAGCAAATGGTGGTGGGAGGCCTGATTTCGTGCTTAACAACTTTCAACAACAACGGAAGGCGCAAATGCAAATTGATTTCTCAGGAGCTACGTCAAGGCCTTCTGTGAGATCGATTGTTGGTGAAACGGAGCTTTCTGATGTTGAGGCCTCTGGCAGGGAGGATAAACCGAGTCCCTCTGATGACAGGAGGCCAAGGAAGAGGGGAAGAAAGCCGGCAAATGGAAGAGAAGAGCCGCTAAATCATGTGGAGGCAGAGAGGCAAAGACGCGAGAAGCTAAACCAACGTTTTTACGCCTTACGAGCTGTTGTGCCGAATATTTCCAAGATGGACAAAGCATCTTTGTTGGGAGATGCTATTGCTTACATCAACGAGCTTCAAGCAAAACTCAAGCTGATGGAATCCGAGAGAGAGCAATTCGGAAGCACTTCTAAAGATGGATCATCATCAATATTGCCGACAAATCCTATCACAGAAAATCATCAAAGTAAAGCTCCTGATGTCGAAATTCAAGCTGCACAAGACGGAGTTATCGTAAAGGTGAGTTGCCCTATAGATGTTCATCCAATTTCAAAACTCATCCAATCATTCAAAGACGCCGAAATTAATATCCTCGAGTCAAAACTTAATGCTACAAATGATACCGTCTTCCACACATTCATAATCAAGTCCCAAAGTTCCGAGCAGCTAACAAAGGAGAAGTTGATTGCcgcattttcaagagaatccaACTCCTTATAG 1887 0.3731 MKIEVGLGGSGLWKEDEKAMVVEVLGVNAFDFLVTNSVSNENLLMAIGNGENLQNKLSDLVERSNVSNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPKEEEEKENFGMKTFLNHNVVENEKQQRLRKRVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPNGHGGPGKCFASGKHLWLCDALKSNSSDYCVRSHLAKSVGFQTIVLVPTDLGVVELGSVRMVGESFELLQTIKSVFSSQSSLSRVNSISSVDETRDENAPFSSLKVGEIIKNNNSFGNLHRHQNNNHGRVEGIGVPKIFGQDLNSATHFREKLAIRKMDERPSWGGSRPNGNGISFPNGVHGSGWRGSQVLRQNVPADVFSPRPPSTSNALELANGGGRPDFVLNNFQQQRKAQMQIDFSGATSRPSVRSIVGETELSDVEASGREDKPSPSDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKLMESEREQFGSTSKDGSSSILPTNPITENHQSKAPDVEIQAAQDGVIVKVSCPIDVHPISKLIQSFKDAEINILESKLNATNDTVFHTFIIKSQSSEQLTKEKLIAAFSRESNSL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00910 628 PANTHER MYC 1 626 IPR045084 GO:0003700|GO:0006355
Tsu08g00910 628 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Tsu08g00910 628 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 626 - -
Tsu08g00910 628 MobiDBLite consensus disorder prediction 407 421 - -
Tsu08g00910 628 CDD bHLH_AtAIB_like 456 532 - -
Tsu08g00910 628 Coils Coil 505 525 - -
Tsu08g00910 628 SMART finulus 465 514 IPR011598 GO:0046983
Tsu08g00910 628 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 523 IPR036638 GO:0046983
Tsu08g00910 628 MobiDBLite consensus disorder prediction 429 470 - -
Tsu08g00910 628 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 246 IPR025610 -
Tsu08g00910 628 Gene3D - 452 524 IPR036638 GO:0046983
Tsu08g00910 628 MobiDBLite consensus disorder prediction 407 470 - -
Tsu08g00910 628 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00910 Tsu-Chr8 9974787 9978266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00910 9 624 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.217 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g00910 bHLH-MYC_N 1.6e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00910 - - gmx:100807078 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00910 08 9974787 9978266 Tsu08g00910 08 9974787 9978266 ECH
Tsu07g04701 07 51462352 51464493 Tsu08g00910 08 9974787 9978266 PCT