Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00909 ATGGAGCAAAATTTGAAAGATGACGTGGCAATAAAAACCGTTACGACCGAGAAATCCGCCGAGAAAACCGGGAAAGTTCGTTGCGGCACACGGCATCCCGTCTACCACGGTGTCCGGAAAAGGCGGTGGGGAAAATGGGTATCGGAGATTAGAGAGCCAAGGAAGAAGTCACGAATATGGTTAGGATCTTTTCCGGCACCGGAAATGGCGGCGAAAGCTTACGACGTTGCGGCGTATTGTTTGAAAGGACGGAAAGCGCAGCTTAATTTTCCTGATGAAGTTCATCGTCTTCCGTTGCTTCCTCCGCCGTCTTCGTGTACTGCTAGAGATATTCAGACGGCGGCGGCTGAAGCGGCtaatatgatgatgattaagGATGTTGCGTCGCCGGAGAATAGTAGCATTGATTCTGGTAGTGGTTGtcgtggtggtggtggtggtgatgattTTTGGGGTGAGATTGAGTTACCGGAGCTTGTGAATGGAACGTGGTGGAGTTACTCTGTTGATGTTGCGGTTTTGTCGCCGGAGATTGAAATTCCGGCGCAGCAATCTTTCACGGCATGTCTCTAG 573 0.4695 MEQNLKDDVAIKTVTTEKSAEKTGKVRCGTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPLLPPPSSCTARDIQTAAAEAANMMMIKDVASPENSSIDSGSGCRGGGGGDDFWGEIELPELVNGTWWSYSVDVAVLSPEIEIPAQQSFTACL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00909 190 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Tsu08g00909 190 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Tsu08g00909 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 190 - -
Tsu08g00909 190 SUPERFAMILY DNA-binding domain 34 93 IPR016177 GO:0003677
Tsu08g00909 190 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Tsu08g00909 190 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 190 - -
Tsu08g00909 190 CDD AP2 35 92 IPR001471 GO:0003700|GO:0006355
Tsu08g00909 190 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Tsu08g00909 190 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Tsu08g00909 190 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00909 Tsu-Chr8 9942430 9943109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00909 30 190 AP2-EREBP Transcription Factor Family AT1G01250 61.212 1.69e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g00909 AP2 8.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00909 K09286 - gmx:100802845 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00909 08 9942430 9943109 Tsu08g00909 08 9942430 9943109 ECH