Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00906 atggCACATCTGGAGTGTAATCTAAGGGCCCCAGGAACTTCTCAACAAGAAAAAGGTGTGAAAAATGATCTGTATCGAGAGTTATGGAAGTTATGTGCAGGTCCTCTGGTTGATGTTCCTAATACTAGTGACAGGGTTTTCTACTTTGCCCAAGGTCACATGGAACAACTGCAAGCATCTACTGATCAAGAATTGAACCATGAAATTCCTCATTTCAATCTACCGTCGAAGCTTTTATGCCGTGTTGTTAATGTTCACTTGTTGgCTGAGCAAGAAACTGATGAGGTTTATGCTTGTGTTTCTTTGATTCCAGAATCAGATCTATCTGACCCTGTAGATCCTGATCCGATTCCTTCCGAGTCTCCAAAACAGAAGTTTCATTCGTTTTGCAAAATATTAACGGCTTCTGATACTAGCACACATGGAGGATTTTCTGTTTTGAGGAAGCATGCTACTGAGTGTCTGCCACCTTTGGATATGACACAAGCAACTCCATCTCAGGAGCTAGTAGCGAAAGATCTTCATGGTTTTGAGTGGAAGTTTAAGCACATATATAGAGGTCAACCAAGGAGGCACTTGCTTACAACCGGCTGGAGTACATTTGTTGCCTCCAAAAGATTGGTGGCCGGAGATGCTTTTGTTTTCCTAAGGGGAGAGGACGGACAACTGAGAGTTGGCGTTAGGCGAATGGCTAAGCAGCATTGTCCTATGCCTTCATCTGTGATATCAAGCCAATGCATGCATCTCGGACTGCTTGCAACTGCTTCTCATGCAGTTATGACTCATACCATGTTCAGTGTCTATTACAAACCAagGACTAGTCAGTTTATTGTTGGTTTGAACAAGTATTTGGCGGCTGTCAACAATTATAAGTTTTCTGTTGGTATGAGATTCAAGATGAGATTTGAAGGAGATGACTCGCCTGAAAGAAGATTTTCTGGGACTATTGTCGGGGTTGGGGATTTATCTGCTGGATGGTCAAATTCTGAGTGGAGATCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGACCAGAGAGAGTTTCTGCATGGGAGATAGAACCTTTCACAGCTTCTCCTTTGAATGTCACTCAACCATCAGTCAAGAGCAAAAGATCTCGGCCCGCCGATGTTTCATCTAGTGGTTTTTGGTATCCTGGGGCTGGATCCTCCCAGGCTCATGACCATACCCAATTAGCCGGTGCTTCCGAAGTCCAAGCAAAGGAGAATCATATCGTAACCTCTAGACTGTTAGCGGAAGGAATTTGGCCTAATTCACCACATTTGAACATTACTTCCAACCCTTATGCTAACATCAACATTGCTTCTAGACCGATCAATGGCCCTACATTCGATCATCGAGTCGAAGACACAAACAAGACTCCGAACCCTCTAGATTGTTGGCTATTTGGAGTTAActtgaacaaaaacaacaaatgcAACAATGTTAATCCTTGTTTTGAGAAAGAACATGGATTTCCAAATTTAAGCATTGGCACTACTAGTGGTCCCAAGGAATCTATCCTTACAAATGCTGCATGTGAAACTGAAAAGGTTCAGAGTCCTAACAATTCATTGTCCACCATAGGGCAGCAGAAGAAAATTATTTGTGATGTATCAACAAATGAAAGGCAGAACAAGCTGGCCACTGTACCATCCAAGAGAAAAAGGACTaagGTGAAAATGCAAGGTGTACATGTTGGTAGAGCACTTGACTTAACCATGTTAAGTGGTTATGATGAACTCATAGATGAAgttgaaaaattatttgatattaaaGGAGAGCTACGTTCACAAAACAAATGGAGAGTTACTTTCACCGATGATGAAAATGACATGATGCTAGTTGGTGATGATCCATGGCCGGAATTTTGCAACATGGTGAAAAAGATTTTCATTTGTTCAAAAGAGGATTTGAACAATATGAAATGCAAGCTACCTAACTCTTCATTAGAGATTGAAGAGACATTGTTGAGCTTAGATTCACAAAATAGGGATGAGAATTAA 2013 0.4059 MAHLECNLRAPGTSQQEKGVKNDLYRELWKLCAGPLVDVPNTSDRVFYFAQGHMEQLQASTDQELNHEIPHFNLPSKLLCRVVNVHLLAEQETDEVYACVSLIPESDLSDPVDPDPIPSESPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQATPSQELVAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEDGQLRVGVRRMAKQHCPMPSSVISSQCMHLGLLATASHAVMTHTMFSVYYKPRTSQFIVGLNKYLAAVNNYKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDLSAGWSNSEWRSLKVQWDEPATIPRPERVSAWEIEPFTASPLNVTQPSVKSKRSRPADVSSSGFWYPGAGSSQAHDHTQLAGASEVQAKENHIVTSRLLAEGIWPNSPHLNITSNPYANINIASRPINGPTFDHRVEDTNKTPNPLDCWLFGVNLNKNNKCNNVNPCFEKEHGFPNLSIGTTSGPKESILTNAACETEKVQSPNNSLSTIGQQKKIICDVSTNERQNKLATVPSKRKRTKVKMQGVHVGRALDLTMLSGYDELIDEVEKLFDIKGELRSQNKWRVTFTDDENDMMLVGDDPWPEFCNMVKKIFICSKEDLNNMKCKLPNSSLEIEETLLSLDSQNRDEN 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00906 670 Pfam AUX/IAA family 552 593 IPR033389 -
Tsu08g00906 670 Pfam AUX/IAA family 600 642 IPR033389 -
Tsu08g00906 670 Pfam Auxin response factor 255 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu08g00906 670 CDD B3_DNA 127 229 IPR003340 GO:0003677
Tsu08g00906 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 452 650 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu08g00906 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 422 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu08g00906 670 ProSiteProfiles PB1 domain profile. 557 638 IPR000270 GO:0005515
Tsu08g00906 670 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Tsu08g00906 670 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677
Tsu08g00906 670 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Tsu08g00906 670 PANTHER AUXIN RESPONSE FACTOR 11 452 650 - -
Tsu08g00906 670 PANTHER AUXIN RESPONSE FACTOR 11 13 422 - -
Tsu08g00906 670 SMART B3_2 129 231 IPR003340 GO:0003677
Tsu08g00906 670 Gene3D - 126 230 IPR015300 -
Tsu08g00906 670 Gene3D - 291 362 - -
Tsu08g00906 670 Gene3D - 553 645 - -
Tsu08g00906 670 SUPERFAMILY CAD & PB1 domains 554 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00906 Tsu-Chr8 9893873 9900005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00906 24 644 B3 DNA Binding Superfamily AT4G23980 55.450 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu08g00906 B3 1.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00906 K14486 - gmx:100790981 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00906 08 9893873 9900005 Tsu08g00906 08 9893873 9900005 ECH