Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00894 ATGGGAAGAGCTCCTTGTTGTGCCAAGGTTGGATTACACAAGGGTCCATGGACTACTAAAGAAGATGCATTGCTTACAAAGTATGTTCAAGCTCATGGTGAAGGCCAATGGAAATCACTTCCTAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGTAGACTTAGATGGATGAATTATCTTAGGCCAGATATAAAAAGAGGTAACATAACTTCAGAAGAAGATGATCTCATAATAAGATTACATTCACTTCTTGGAAACAGATGGTCACTTATAGCCGGAAGATTACCAGGAAGAACAGATAATGAAATAAAGAATTACTGGAACACGCATCTTCTTAAAAAGATACAAAGAAATCAACAAACATGTGATGTTTCATCAGATCATGATGATGAACAATTACAACAAtccaagaaaaaaaagaagaacaacaccaacaacaagaagagaaagagaaatgaCAAGAAAAAAGGTGCTAAGAATAATAATCATGAAGAGGAAGAGAAAATTAAAGTTTATTTACCAAAACCCATTAGGATAAAGGCTATGAATTTACCAAGAACAGATAGTGGTAATTCATATACTTTTGAATCAAATTCATCATTTGGTAgtcaagaaaaagaaagaacaaaagaaCAACAAGTAAGAAACAATAACGTTGTTTGTGAGATGGTTGGTGAGATAGGTGAAAATGACGGTTTTGGACTCTCACGTGATGACCATGACTTAGTCAACGTTGATAGATTAGGGATTGAATACGAATCATATTTTGACACGTGTGATGCTGGTGATCATGGAACATTAGAGAGACTCTATGATGAATACTTGCAACTTTTGAATATGGAAGATTGCAATTACGAGTTTGATTCTTCTTTTGCTCAATCtttctttgattcaaataatgatattataaataatatttaa 924 0.3052 MGRAPCCAKVGLHKGPWTTKEDALLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITSEEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLLKKIQRNQQTCDVSSDHDDEQLQQSKKKKKNNTNNKKRKRNDKKKGAKNNNHEEEEKIKVYLPKPIRIKAMNLPRTDSGNSYTFESNSSFGSQEKERTKEQQVRNNNVVCEMVGEIGENDGFGLSRDDHDLVNVDRLGIEYESYFDTCDAGDHGTLERLYDEYLQLLNMEDCNYEFDSSFAQSFFDSNNDIINNI 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00894 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu08g00894 307 SMART sant 66 114 IPR001005 -
Tsu08g00894 307 SMART sant 13 63 IPR001005 -
Tsu08g00894 307 Coils Coil 134 169 - -
Tsu08g00894 307 MobiDBLite consensus disorder prediction 184 214 - -
Tsu08g00894 307 Gene3D - 71 112 - -
Tsu08g00894 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu08g00894 307 CDD SANT 16 61 IPR001005 -
Tsu08g00894 307 MobiDBLite consensus disorder prediction 124 170 - -
Tsu08g00894 307 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 288 - -
Tsu08g00894 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu08g00894 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu08g00894 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu08g00894 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu08g00894 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu08g00894 307 CDD SANT 71 112 IPR001005 -
Tsu08g00894 307 MobiDBLite consensus disorder prediction 124 139 - -
Tsu08g00894 307 Gene3D - 14 66 - -
Tsu08g00894 307 PANTHER MYB TRANSCRIPTION FACTOR 1 288 - -
Tsu08g00894 307 MobiDBLite consensus disorder prediction 141 157 - -
Tsu08g00894 307 MobiDBLite consensus disorder prediction 186 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00894 Tsu-Chr8 9774264 9775704 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00894 1 116 MYB Transcription Factor Family AT5G49330 75.862 4.89e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g00894 Myb_DNA-binding 9.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00894 K09422 - gmx:100101857 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00894 08 9774264 9775704 Tsu08g00894 08 9774264 9775704 ECH
Tsu07g04706 07 51500282 51501259 Tsu08g00894 08 9774264 9775704 PCT