Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00890 ATGGGTAGAGCACCTTGTTGTGCCAAAGTTGGATTGCAGAAGGGTCCATGGACTACTAAAGAAGATGCATTACTTACAAAGTATGTTCAAGCTCATGGTGAAGGAAAATGGAAATCACTTCCCAAAAAAGCTGGACTTCTTAGATGTGGAAAAAGTTGTAGACTTAGATGGATGAATTATCTGAGACCAAATATAAAGAGAGGAAATATAACTCCAGATGAAGATGATCTCCTAATAAGGTTACATTCACTTCTTGGTAATAGATGGTCACTTATTGCTGGAAGATTACCGGGAAGAACGgacaatgaaataaaaaactattggaACACTCATCTTCTTAAAAAGATTcaaagaaatcaacaaaaatgtGATGTTACCACAGATTGcaatgaacaacaacaacaatccaagaaaaacaacaataaaaagaagaagaagaacaatgacgacaacaacaacaagaaaaagaaaagtgacATGAAAAAAGATGCAAAGAATGATAATCATGAAGAGGAAGAGAAAATTAAAGTTTATTCACCAAAACCCATTAGGATAAAGGCTTTAAATTTACCAAGAAGAGATAGTGATAATTCATTATTTACTATTgaatcaaattcatcaattggtagccaagaaaaagaaggaacAGAACAACAAGTGAGAAACGACAATGTTGTTTTTGAGGTTGGTGTGATAGGTGAAAATGACTTTGTCAACGATGACATGTTAGATATTGAAGGCGAATCATATTTCAACACGTGTGGTGTTGGTGATCATGGAAAACTAGAGAGACTCTATGATGAATACTTGCAACTTTTGAGCATGGAAGATTGCAATTACGAGTTTGATTCTTCTTTTGCTCAATCCTTCTTTGATTCAAGCAatgatattaatatttaa 900 0.2767 MGRAPCCAKVGLQKGPWTTKEDALLTKYVQAHGEGKWKSLPKKAGLLRCGKSCRLRWMNYLRPNIKRGNITPDEDDLLIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLLKKIQRNQQKCDVTTDCNEQQQQSKKNNNKKKKKNNDDNNNKKKKSDMKKDAKNDNHEEEEKIKVYSPKPIRIKALNLPRRDSDNSLFTIESNSSIGSQEKEGTEQQVRNDNVVFEVGVIGENDFVNDDMLDIEGESYFNTCGVGDHGKLERLYDEYLQLLSMEDCNYEFDSSFAQSFFDSSNDINI 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00890 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu08g00890 299 Coils Coil 154 174 - -
Tsu08g00890 299 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu08g00890 299 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu08g00890 299 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu08g00890 299 CDD SANT 16 61 IPR001005 -
Tsu08g00890 299 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 282 - -
Tsu08g00890 299 MobiDBLite consensus disorder prediction 143 176 - -
Tsu08g00890 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu08g00890 299 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu08g00890 299 Gene3D - 71 112 - -
Tsu08g00890 299 SMART sant 13 63 IPR001005 -
Tsu08g00890 299 SMART sant 66 114 IPR001005 -
Tsu08g00890 299 CDD SANT 71 112 IPR001005 -
Tsu08g00890 299 Gene3D - 14 66 - -
Tsu08g00890 299 PANTHER MYB TRANSCRIPTION FACTOR 1 282 - -
Tsu08g00890 299 MobiDBLite consensus disorder prediction 127 176 - -
Tsu08g00890 299 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00890 Tsu-Chr8 9733029 9734414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00890 1 116 MYB Transcription Factor Family AT5G49330 74.138 7.84e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g00890 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00890 K09422 - gmx:100101857 311.997