Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00884 ATGATTTCTGATTCTGTTTTAGCATTGCATTCTTCTGACAATGTTTTCAGAACAAGTCCTGATTTTGAGGAGGACTTTGTAGAGAAAGATCCAACCGGCCGGTACATTAGGTACAATGAAATCTTGGGCAGGGGTGCCTTCAAGACAGTCTATAGGGCATTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAGTTAGGATTGATGGCCTCTTACATTCAGTAGATGATCTTGCAAAATTATATTCTGAAGTTCATCTATTGAAGTCTTTGAAACATGAAAATATCATTAAGTTCTACGACTCCTGGATCGATGATACGCAGAAAACCGTTAACATGATCACTGAACTATTCACATCTGGAAACTTAAGACAGTACCGTAAGAAGCATAAATATGTTGACATGAAAGCCATAAAAGATTGGGCCAGACAGATTCTTCAAGGCTTAGTATATCTTCACGGTCACAAACCACCTATTATTCACCGAGACTTGAAATGCGATAACATCTTTGTGAATGGAAACCAAGGAGAAGTTAAGATAGGTGATCTCGGTTTGGCAATCGTCATGCAGCAGCCAACTGCTCGGAGCGTTATTGGGACACCCGAGTTTATGGCTCCTGAATTATATGAAGAGGAGTACAATGAACTTGTTGACATCTATTCTTTTGGAATGTCAATGTTAGAGATGGTTACTCTTGAGTATCCCTATAACGAATGCACCAACCCAGCTCAAATATTTAAGAAAGTTACCTCGGGCATCAAACCTCCTTCCCTTAATAAGGTAAGTGACCCTCAAATTAAGGCGTTTATTGAGAAATGCCTGGTTCCAGCATCTGAGAGATTGTCGGCAGAGGAACTTCTTAACGACCCGTTTCTACAAATTGAGAGTCAAATGTCTCCTATTAAAACTCGAAGAGCTACAAATACGTCAAGGTCTGGATCTATGGACATGGATGCTGACTACAAACATCTTTCCGAGAGTATCTATGCTGAAAGCAGCAGCCAGGGAAGTCCACATTTTCCAGTTtttcaagtccaaaggactaATAAGAACAATGAGTTTAGGTTaaaagggactaaaaatgaTGATAACTCGGTATCATTGACCTTGCGTATTGCGGATACAAGTGGCCGAGTAAGGAATATACATTTTCTCTTTTACCTTGATACAGACACTGCAGTCTCCGTGGCCTCAGAGATGGTTGAACATTTGGAGTTGGCGGATCATGATGTGGCATTCATTGCTGAGCTTATTGATTACTTGATAATGAAACTTCTTCCTTGGTGGAAACCTTCTCATGATCATAACTCAACTGGAGGAGTAAGTCTTTGTAGTGGTTCTACAAATGTCGATAGCCAAACGGCATGCCCTTGGAGTCCTATTGTAACTAGTGTTCCCTCAGAAACAGTTAGTGGTCAAGACGCATTTTCCGGGTTTAATACAATTCCTAGAGATGGTTTAGTGACACCTGGAAAGGTCTGTTTTTACAAAAATACTGATAATGCTATTTTCAAGGGTGCCTTCGATTCTTCTAGTTTGGTTAACTCAGAAGATCGATATTCACGAGGATCGGGAGCTTCGGAGATAGCTGTTGATGATGTTTCAATGAAAAGTGCCAATTGTCATGATTCAAAATTTCTTGGTGTTGGATATTTTAAATGCATAGCAAGGTCGATCACAGGGCTTGAAGTTGGTGATGCGTATTTCGAAGATTGTAAATTGCAGGCAGCAGATTACAATATTGGGGGAAGCACTGTGAATTCAGAACTATCAAATGTTATGAGCTTGCCAAGTAGTTGTTGTTCTATGTCTTCAATCGAAAAGGATATTGATCTCGAGCTAAAAAATGAACTCGAGGCAATTGAGTCGCAATATCAGCATTGGATTGAGGAACTCACTAAAATGAAATTGGAGGCATTGGAAGCCACTAGAAGGAGATGGATGACCAAGAAGAAAGTAGATATTCATTGA 1974 0.3931 MISDSVLALHSSDNVFRTSPDFEEDFVEKDPTGRYIRYNEILGRGAFKTVYRAFDEVDGIEVAWNQVRIDGLLHSVDDLAKLYSEVHLLKSLKHENIIKFYDSWIDDTQKTVNMITELFTSGNLRQYRKKHKYVDMKAIKDWARQILQGLVYLHGHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMSMLEMVTLEYPYNECTNPAQIFKKVTSGIKPPSLNKVSDPQIKAFIEKCLVPASERLSAEELLNDPFLQIESQMSPIKTRRATNTSRSGSMDMDADYKHLSESIYAESSSQGSPHFPVFQVQRTNKNNEFRLKGTKNDDNSVSLTLRIADTSGRVRNIHFLFYLDTDTAVSVASEMVEHLELADHDVAFIAELIDYLIMKLLPWWKPSHDHNSTGGVSLCSGSTNVDSQTACPWSPIVTSVPSETVSGQDAFSGFNTIPRDGLVTPGKVCFYKNTDNAIFKGAFDSSSLVNSEDRYSRGSGASEIAVDDVSMKSANCHDSKFLGVGYFKCIARSITGLEVGDAYFEDCKLQAADYNIGGSTVNSELSNVMSLPSSCCSMSSIEKDIDLELKNELEAIESQYQHWIEELTKMKLEALEATRRRWMTKKKVDIH 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00884 657 Pfam Protein kinase domain 39 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00884 657 Gene3D Phosphorylase Kinase; domain 1 20 117 - -
Tsu08g00884 657 PANTHER KINASE DOMAIN PROTEIN 5 657 - -
Tsu08g00884 657 Gene3D Transferase(Phosphotransferase) domain 1 119 300 - -
Tsu08g00884 657 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 367 423 IPR024678 GO:0004674|GO:0005524
Tsu08g00884 657 SUPERFAMILY Protein kinase-like (PK-like) 30 294 IPR011009 -
Tsu08g00884 657 SMART serkin_6 36 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00884 657 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 657 - -
Tsu08g00884 657 Gene3D - 365 440 - -
Tsu08g00884 657 CDD STKc_WNK 34 293 - -
Tsu08g00884 657 ProSiteProfiles Protein kinase domain profile. 36 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00884 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Tsu08g00884 657 Coils Coil 619 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00884 Tsu-Chr8 9661426 9666569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00884 23 437 MAP Kinase Kinase Kinase AT5G41990 62.470 6.81e-175 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tsu08g00884 Pkinase 8.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00884 K08867 - gmx:100809602 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00884 08 9661426 9666569 Tsu08g00884 08 9661426 9666569 ECH