Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00881 ATGATTTGTTTCCTCATTCAACACATCTACAGCTTCATGTGCATCAGTCCACACTTAAATTCAGGATTTGCTTTTGTCTATTATGAAGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGATAAGCGACGATTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGTTCAAAGGCAAACCAAAAGCCCACAAAAACTCTATTTGTGATTAACTTTGACCCGATTCGCACAAGAGTTAGTGATATAGAGAGACACTTCAAACCTTATGGGGAGCTTCATCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTATGAAACACAAGAAGATGCTACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTTGTGTCTGTGGAGTATGCTCTGAGGGATGATAGTGAGAGGGTTGACAATTATGGAAGTCCCAGGAGAGGAGGGGGTCTTGCTAGATCTCCCAGTCCAGGTTATCGCAGGAGACCAAGTCCTGACTATGGCCGTCCACGCAGTCCTGCGTATGATAGGTATAGTGGACCGGACAGGCGTAGGAGTCCTGATTACGGAAGAAACAGGAGTCCTGATTATGGCAGGAACAGGAGTCCTGAATACGGAAGATATCGCAGTCGTTCCCCTATACGAAGGTCAAGAACTTAG 705 0.4539 MICFLIQHIYSFMCISPHLNSGFAFVYYEDERDAEEAIRALDNVPFGHDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVSDIERHFKPYGELHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSERVDNYGSPRRGGGLARSPSPGYRRRPSPDYGRPRSPAYDRYSGPDRRRSPDYGRNRSPDYGRNRSPEYGRYRSRSPIRRSRT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00881 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 148 IPR000504 GO:0003723
Tsu08g00881 234 Gene3D - 72 157 IPR012677 -
Tsu08g00881 234 SUPERFAMILY RNA-binding domain, RBD 19 151 IPR035979 GO:0003676
Tsu08g00881 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 60 IPR000504 GO:0003723
Tsu08g00881 234 MobiDBLite consensus disorder prediction 153 234 - -
Tsu08g00881 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 46 IPR000504 GO:0003723
Tsu08g00881 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 141 IPR000504 GO:0003723
Tsu08g00881 234 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 20 187 IPR029537 GO:0000398|GO:0005681
Tsu08g00881 234 SMART rrm1_1 78 144 IPR000504 GO:0003723
Tsu08g00881 234 MobiDBLite consensus disorder prediction 191 226 - -
Tsu08g00881 234 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 20 187 - -
Tsu08g00881 234 Gene3D - 13 71 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00881 Tsu-Chr8 9647930 9650727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00881 22 150 Eukaryotic Initiation Factors Gene Family AT1G49760 25.517 4.19e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00881 K12893 - gmx:100797709 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00881 08 9647930 9650727 Tsu08g00881 08 9647930 9650727 ECH