Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00880 ATGAAAGTTCCAATGGAGGAAAAACCATTCCCTGCATGGTCATGGTCTGTTGAGCAGTGTTTGAAAGAGTACAGTGTGAAACTAGACAAGGGTTTGAGTTCTTCTGAGGTTCAGAAGCGGCGCGAAAAGTATGGTTGGAATGAGTTAgcaaaagaaaagggaaagCCATTATGGAAACTAGTCTTAGAACAATTTGATGACATGTTGGTGAAGATACTTTTGGTTGCCGCCTTTATATCGTTTCTTTTGGCATACATTGAAGGAAGTGAATCGGGCGAGTCTGGATTCGAAGCTTATGTAGAGCCACTCgtgattattttgattttagtccttaaTGCGATTGTCGGAGTTTGGCAAGAGAATAATGCTGAAAAGGCTCTTGAAGCTCTGAAAGAGTTGCAATGTGAATCTATTAAAGTGTTAAGGGACGGATATTTTGTTCCTGACTTGCCTGCGCGAGAGCTTGTTCCAGGCGACATTGTTGAGTTGCGTGTCGGAGATAAAGTCCCTGCTGACATGAGAGTTGCAGCTTTGAAAACCTCAACATTGAGAGCGGAACAAAGCTCGTTAACCGGAGAAGCAATGCCTGTTCTCAAAGGCACGAATCCTATATATTTGGATGATTGTGAATTGCAGGCCAAAGAAAATATGGTATTTGCAGGCACAACTGTTGTCAATGGGAACTGTCTTTGCATTGTTATTACCACAGCAATGAACACAGAAATCGGAAAGATACAAAAGCAAATACACGAGGCTTCGTTGGAGGAGAGCGATACTCCGTTGAAGAAGAAGTTGGACGAATTTGGTGGAAGGCTAACAACTTCTATTGGAATAGTTTGTCTTGTTGTTTGGATTATAAACTacaaaaatttcatttcttGGGATGTTGTTGATGGATGGCCTTCAAATATTCAGTTTTCTTTTCAGAAATGCACTTACTACTTCAAAATCGCCGTCGCTCTTGCTGTTGCTGCAATACCAGAAGGTCTTCCGGCGGTTATCACAACATGTTTAGCACTTGGTACAAGAAAAATGGCACAAAAGAATGCAATTGTGAGAAAGCTTCCAAGTGTTGAAACCTTAGGATGTACCACTGTGATTTGTTCAGATAAAACCGGTACACTGACTACGAATCAAATGTCTGCGACGGAGTTTTTTACTTTGGGAGGGAAAACTACTGCTTCTAGAGTCCTTAAAGTTGAAGGGACAACTTATGATCCAAATGATGGAGGCATTGTTGATTGGACTTGCTATAACATGGATGCTAACTTGTTAGCCATGGCAGAAATATGTGCTGTTTGTAATGATGCCGGGGTTTATTTTGACGGTCGCTTATTTCGAGCCACAGGTTTGCCTACTGAAGCTGCTCTCAAAGTTTTGGTTGAAAAGATGGGGTTTCCAGATATCAAGTCAAGGAACAAAACACGCGATGCACAAGTTGCAACAAACAACATGACGGATTGCAACGCGATGAAGCTAGGCTGTTGTGACTGGTGGAATAGAAGATCCAAAAGGGTAGCTACATTGGAGTTTGACCGTGTTAGGAAGTCAATGAGTGTTATTGTTCGCGAACCAGATGGGCAAAATCGGCTTTTGGTCAAGGGTGCTGTTGAGAGTTTATTGGAACGAAGTTCGTATGTGCAACTTGCCGATGGATCTCTTGTTCCAATAGATGATCAATGTAGGGGACTACTTCTTCAAAGACTCCATGAGATGAGTTCGAAGGGATTGCGTTGCTTAGGTTTGGCATGTAAAGATGAGTTAGGAGAATTTTCAGACTATTATGCAGACAGTCATCCTGCTCACAAGAAATTGCTTGATCCAACATACTACTCATCGATTGAAAGTGATTTAGTTTTTGTCGGTGTCGTTGGTTTAAGAGACCCTCCTAGAGAGGAAGTTCATAAAGCAATTGAGGATTGTAAGCAAGCTGGTATTCAAGTTATGGTTATAACCGGCGATAATAAGTCAACAGCTGAGGCTATTTGTAAGGAAATCAAATTGTTCTCTAGAGATGAGGATCTTACAGGTCAAAGTTTGACAGGTAAAGAATTCATGTCTCTTTCTCATTCGGAACAAGTTAAGTTATTGTTGAGAGAAGGAGGCAAGGTTTTCTCTCGAGCCGAGCCTAGACACAAGCAAGAAATTGTGAGACTATTGAAGGAAATGGGAGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGAATAACTGGAACTGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGATGACAATTTTAGTACTATCGTTTCAGCTATCGCTGAGGGTCGCGCTATTTATAATAACATGAAAGCATTTATAAGGTACATGATATCATCAAATGTTGGGGAAGTGATATCCATATTCTTGACGGCTGCTTTAGGGATCCCAGAATGCATGATACCAGTGCAACTTCTGTGGGTGAATTTGGTCACCGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGAAAAAGTGACGATCCTCTTATAAGTACTTGGGTTCTTTTCCGTTACCTTGTAATAGGTTCCTATGTGGGAATTGCAACAGTTGGCATTTTTGTCTTGTGGTACACACAAGCATCTTTTCTTGGCATGAATCTTGTTAGTGATGGACACACAGTTATAGAATTATCACAGCTTCTCAACTGGAGGGAATGTCCTTCATGGTCTAATTTCACCGTTTCTTCATTTGACGCTGGTGGCGGTCGCTTGATCACATTCTCAAATCCCTGTGACTATTTTTCAGTTGGAAAAGTCAAGGCCATgactctttctctctctgtcTTGGTGGCAATTGAAATGTTTAATTCTTTGAATGCTCTCTCAGAAGAGAATAGCTTAAGGACATTACCACCTTGGAGAAACCCTTGGCTTTTGGTAGCAATGACAATTTCTTTAGGACTACATTGTCTCATCCTTTACATTCCATTCCTCTCTGAGGTGTTTGGTGTTGCTCCACTAAGTTTAAAGGAGTGGTTTTTAGTGATTCTGATATCAGCACCTGTTATTCTTATTGATGAGATTCTAAAATTAGTGGTTAGGAGTCAAAGGAAGAAGACAAAACAGAAAGAAGCATGA 3165 0.4041 MKVPMEEKPFPAWSWSVEQCLKEYSVKLDKGLSSSEVQKRREKYGWNELAKEKGKPLWKLVLEQFDDMLVKILLVAAFISFLLAYIEGSESGESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESIKVLRDGYFVPDLPARELVPGDIVELRVGDKVPADMRVAALKTSTLRAEQSSLTGEAMPVLKGTNPIYLDDCELQAKENMVFAGTTVVNGNCLCIVITTAMNTEIGKIQKQIHEASLEESDTPLKKKLDEFGGRLTTSIGIVCLVVWIINYKNFISWDVVDGWPSNIQFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSATEFFTLGGKTTASRVLKVEGTTYDPNDGGIVDWTCYNMDANLLAMAEICAVCNDAGVYFDGRLFRATGLPTEAALKVLVEKMGFPDIKSRNKTRDAQVATNNMTDCNAMKLGCCDWWNRRSKRVATLEFDRVRKSMSVIVREPDGQNRLLVKGAVESLLERSSYVQLADGSLVPIDDQCRGLLLQRLHEMSSKGLRCLGLACKDELGEFSDYYADSHPAHKKLLDPTYYSSIESDLVFVGVVGLRDPPREEVHKAIEDCKQAGIQVMVITGDNKSTAEAICKEIKLFSRDEDLTGQSLTGKEFMSLSHSEQVKLLLREGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAIAEGRAIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDPLISTWVLFRYLVIGSYVGIATVGIFVLWYTQASFLGMNLVSDGHTVIELSQLLNWRECPSWSNFTVSSFDAGGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRTLPPWRNPWLLVAMTISLGLHCLILYIPFLSEVFGVAPLSLKEWFLVILISAPVILIDEILKLVVRSQRKKTKQKEA 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00880 1054 Pfam Cation transporter/ATPase, N-terminus 13 80 IPR004014 -
Tsu08g00880 1054 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 1047 IPR023298 -
Tsu08g00880 1054 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 7 1050 - -
Tsu08g00880 1054 Pfam E1-E2 ATPase 133 348 - -
Tsu08g00880 1054 Gene3D - 30 252 - -
Tsu08g00880 1054 PRINTS P-type cation-transporting ATPase superfamily signature 644 654 - -
Tsu08g00880 1054 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Tsu08g00880 1054 PRINTS P-type cation-transporting ATPase superfamily signature 622 633 - -
Tsu08g00880 1054 PRINTS P-type cation-transporting ATPase superfamily signature 730 749 - -
Tsu08g00880 1054 PRINTS P-type cation-transporting ATPase superfamily signature 754 766 - -
Tsu08g00880 1054 PRINTS P-type cation-transporting ATPase superfamily signature 368 382 - -
Tsu08g00880 1054 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 375 626 IPR023299 GO:0000166
Tsu08g00880 1054 Gene3D - 378 629 IPR023299 GO:0000166
Tsu08g00880 1054 Pfam haloacid dehalogenase-like hydrolase 365 744 - -
Tsu08g00880 1054 PRINTS Sodium/potassium-transporting ATPase signature 983 1007 - -
Tsu08g00880 1054 PRINTS Sodium/potassium-transporting ATPase signature 361 382 - -
Tsu08g00880 1054 Gene3D - 63 1043 - -
Tsu08g00880 1054 SUPERFAMILY HAD-like 366 834 IPR036412 -
Tsu08g00880 1054 SFLD C1.7: P-type atpase like 349 783 - -
Tsu08g00880 1054 SMART Cation_ATPase_N_a_2 11 85 IPR004014 -
Tsu08g00880 1054 Gene3D - 365 775 IPR023214 -
Tsu08g00880 1054 Pfam Cation transporting ATPase, C-terminus 815 1041 IPR006068 -
Tsu08g00880 1054 ProSitePatterns E1-E2 ATPases phosphorylation site. 370 376 IPR018303 -
Tsu08g00880 1054 PANTHER CALCIUM-TRANSPORTING ATPASE 7 1050 - -
Tsu08g00880 1054 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 703 815 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g00880 1054 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 305 393 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g00880 1054 SFLD p-type atpase 349 783 IPR044492 -
Tsu08g00880 1054 SUPERFAMILY Calcium ATPase, transduction domain A 139 248 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00880 Tsu-Chr8 9633719 9638919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00880 6 1052 Primary Pumps ATPases(2) AT4G00900 78.402 0.0 1700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00880 K01537 - gmx:100792952 1887.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00880 08 9633719 9638919 Tsu08g00880 08 9633719 9638919 ECH