Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00878 ATGATGGTTGTTGATATGCTAACTTCTGGTCCTACCTCAACTGCGATTTCTCAAATCATAGAAACCATTAGTGAGTTTGTATTTGCTGCTAATGATGTACTTCTGGAGAAGGATAGTTTTAAGGAACTTGGCACTTATTTGGAAAGAATTATGCCGGTTTTAAAAGAGTTGAGGAGAGAAAAAGTGAGTGATTCTGAGACATTCAACCGTGCTATTGATATTATGAATCGCGAAACGAAAGAAGCGAAGGTACTTGCTTTAGAATGCAGTAAGAAGAGCAAGGTTTATCTGTTAATGAATTGCAGGTCTATTGTAAAGAAGTTAGAAAATCACACGAAGGAGCTAAGCAAGGCGCTTGGTCTTCTTCCGTTAGCTACATCAGGTATTTCGGCTGGAATTTTGCAAGAGATTGAAAAGATTTGTGATAATATGGAGAAAGCTGGATTTAAGGCTGCGGTAGCGGAAGAGGAGATTTTAGAGAAAATTGAGTCAGGGATAAGAGAAAACAATGTCAATCGTTCGTATGCGAATAATTTAATGACTCTCATTGCTGAGGCTGTTGGAATTACAAATGAGAAATCGACAATGAAGGTTGAACTTGAAGAGTttaagaaagaaattgaaaatgcTCGCGTTGATAAGAAAAAGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGAGCTGATGCAGCCTCGTCACCAAACGAAAGGAAACTGAAATACTTTGCAAAACGCCAATCTTTAGGTAGTCGAATATTGGAGCCTTTACAGTCATTTTATTGCCCTATTACACATGATGTTATGGTGGAACCTGTTGAAACTTCGTCAGATCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCAGAAGGAAATAAGTTGTGTCCTTTGACATTGATTCCTTTAGATACATCGGTTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAGGATAGAAACACAATGATTACAATTGCTAcattaaaagagaaaatacaTCAGTTtggagatgatgatgaagtgATTAATTCACTAAAAACTCTTCAAGAGTTGTGTGAGCAGAGAGAGCAACACAGGGAATGGTTGATGCTTGAAGACTACATACTAGTTCTTATTCAAATTCTCGGTTCGAGAAACCGCGATATAAGGAATCATGCTCTTGTCATCCTGTGCATTCTAGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTGTAACGGTTGATAATGCAATTGAATCGATTGTCCATTCTCTTGGACGGCGTCAGGAGGAAAGAAAGTTAGCAGTAGCATTACTGCTTGAATTGTCCAAATATGATTTGGCTCGAGAACATATTGGAAAAGTTCAAGGTTGCATACTGCTATTGGTGACTATGTCTAATGGAGATGATAATCAAGCTGCTGAAGATGCAACTGAGCTATTGGATAATCTTTCGTACTCTGATCAGAATGTTATACTGATGGCAAAGGCAAATTATTTCAAGCATTTACTGCAGCGTCTCTCCACAGGAGCAGATGATGTAAAGATGATTATGGCGAAAACTTTAGCAGAAATGGAGTTAACTGACCACAATAAGGAGTCCTTATTTGAGGGTGGTGTATTAGCTCCTCTTCTTCACTTGTTCTTACATAATGATCTTCAGGTTAAAACAGTGGCCACAAAAGCTCTTAGGAATTTATCTAGTTTAAAGAGAAATGGACTAGAAATGATTCGACAAAGGGCCGTACGACCGTTGCTTGACCTCCTTTTCCACCATAGCATACATACATCAAGTTTATGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAAGATTCTGAAACACCAGTTTTATTGCTAGATTCTGATGATGACGTTTTTAACCTTTTCCCTCTTGTCGGTGTGACACAACCTGGTGTGCAACAAAACATTATCCAGACCTTTTATGTCTTGTGTCAGTCACCCTCATCGTCACATATCAGGACCAAGCTAAATCAGTGCTCAGCTATCCCAGAATTGGTTAAGTTGTGTGAGAATGAGAATCTAAACCTAAGAGCATGTGCTGTAAAGTTATTTTCATGCTTGGTAGAGAGCTGCGATGAATCCATCATACTAGAGAATGTTGATCAGAAATGCATCAATACGTTACTTCAGATCCTAAAATCTTcatctgatgaagaagaaataCTTTCTGCTATGGAAATAATATGCCATCTTCCAGAAATTGATCAGATAACTCAATGGATTCTAGATGCTGGTATACTTCCAGTCATTTATAAATCTGTTCAAGACGGTAGAGACAGAGATCTTCAAAGGAGTAACTTGGTAGAGAAAGCGATTGGGGCTTTACATCGTTTTACAGTTCCAACAAACTTGGAGTGGCAAAAAATTGCAGCTGAAACCGGGTTTATAACTGTTTTAGTTCAGTTACTTGAAAGTGGAACAACCTTAACAAAACAACGTGCGGCGATGTGTCTTGCTGAATTTTCTAAAAGCTCGGTTAAGCTCAGCAGACCAATTCCAAAGCAAAAAGGACTACTATGTTGCTTCTCAGCTCCAAAAGAAATTGGCTGCAATGTTCACGGAGGAATATGCACCGTTAAGTCATCGTTTTGCCTTTTAGTAGCCGAAGCAATTGGACCACTCACAAAAAATCTCGGAGAATCTGATCATGGAGTTTGTGAAGCTTCTTTGGATGCTTTATTAACATTGATTGAAGGTGATAGAATAGAGAGTGGTGGTAAAGTGCTTGCAAAAGCAAATGCAATAccattaataataaaatttcttaGTTCTACCTCTCTTGGGTTGCAAGAAAAGTCTCTACAAGCTTTGGAAAGGCTTTTTCAGCTAGCAGAATTCAAACAAATGTATGGAGCCTCGGCTCAAATGCCTCTAGTTGACTTAACTCAAAGGAGTAATGGTAGAGTTAGATCCACGTCAGCTAGAGTATTGGCACATTTGAATGTACTTCATGATCAGTCTTCATACTTTTAA 3021 0.374 MMVVDMLTSGPTSTAISQIIETISEFVFAANDVLLEKDSFKELGTYLERIMPVLKELRREKVSDSETFNRAIDIMNRETKEAKVLALECSKKSKVYLLMNCRSIVKKLENHTKELSKALGLLPLATSGISAGILQEIEKICDNMEKAGFKAAVAEEEILEKIESGIRENNVNRSYANNLMTLIAEAVGITNEKSTMKVELEEFKKEIENARVDKKKAEAMQMDQIIALLERADAASSPNERKLKYFAKRQSLGSRILEPLQSFYCPITHDVMVEPVETSSDQTFERSAIEKWFAEGNKLCPLTLIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIHQFGDDDEVINSLKTLQELCEQREQHREWLMLEDYILVLIQILGSRNRDIRNHALVILCILAKDNEEAKERIVTVDNAIESIVHSLGRRQEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSNGDDNQAAEDATELLDNLSYSDQNVILMAKANYFKHLLQRLSTGADDVKMIMAKTLAEMELTDHNKESLFEGGVLAPLLHLFLHNDLQVKTVATKALRNLSSLKRNGLEMIRQRAVRPLLDLLFHHSIHTSSLWEDVAAIIMQLAASTISQDSETPVLLLDSDDDVFNLFPLVGVTQPGVQQNIIQTFYVLCQSPSSSHIRTKLNQCSAIPELVKLCENENLNLRACAVKLFSCLVESCDESIILENVDQKCINTLLQILKSSSDEEEILSAMEIICHLPEIDQITQWILDAGILPVIYKSVQDGRDRDLQRSNLVEKAIGALHRFTVPTNLEWQKIAAETGFITVLVQLLESGTTLTKQRAAMCLAEFSKSSVKLSRPIPKQKGLLCCFSAPKEIGCNVHGGICTVKSSFCLLVAEAIGPLTKNLGESDHGVCEASLDALLTLIEGDRIESGGKVLAKANAIPLIIKFLSSTSLGLQEKSLQALERLFQLAEFKQMYGASAQMPLVDLTQRSNGRVRSTSARVLAHLNVLHDQSSYF 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00878 1006 CDD RING-Ubox_PUB 263 303 IPR045210 -
Tsu08g00878 1006 Gene3D - 339 632 IPR011989 -
Tsu08g00878 1006 Gene3D - 13 127 IPR036537 GO:0007166
Tsu08g00878 1006 Gene3D - 866 1004 IPR011989 -
Tsu08g00878 1006 Gene3D - 633 854 IPR011989 -
Tsu08g00878 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1006 - -
Tsu08g00878 1006 Coils Coil 193 220 - -
Tsu08g00878 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 338 IPR013083 -
Tsu08g00878 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Tsu08g00878 1006 SUPERFAMILY RING/U-box 248 331 - -
Tsu08g00878 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1006 - -
Tsu08g00878 1006 SMART arm_5 406 446 IPR000225 GO:0005515
Tsu08g00878 1006 SMART arm_5 707 746 IPR000225 GO:0005515
Tsu08g00878 1006 SMART arm_5 665 705 IPR000225 GO:0005515
Tsu08g00878 1006 SMART arm_5 447 488 IPR000225 GO:0005515
Tsu08g00878 1006 SMART arm_5 530 570 IPR000225 GO:0005515
Tsu08g00878 1006 SMART arm_5 917 958 IPR000225 GO:0005515
Tsu08g00878 1006 SUPERFAMILY ARM repeat 807 1000 IPR016024 -
Tsu08g00878 1006 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Tsu08g00878 1006 SUPERFAMILY ARM repeat 344 834 IPR016024 -
Tsu08g00878 1006 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Tsu08g00878 1006 Pfam Armadillo/beta-catenin-like repeat 531 570 IPR000225 GO:0005515
Tsu08g00878 1006 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00878 Tsu-Chr8 9625019 9630177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00878 250 1006 U-box Gene Family AT1G76390 27.715 1.43e-59 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00878 - - gmx:100799969 1503.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00878 08 9625019 9630177 Tsu08g00878 08 9625019 9630177 ECH
Tsu08g00878 08 9625019 9630177 Tsu07g04711 07 51526514 51531609 ECH