Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00864 ATGTTAGAGTTTGAAAATATGGAATATGGTCAATATAGTTATTCAACAGAAGCTGGTGAGGAAGAAACTTACACAACTAGTAGCACAAGTTCcatgagaaagaagaaaaacaagaatccaAAGAGGTTTAGTGATGAACAAATTAAATCATTGGAAACTATGTTTGAGACTGAATCAAGACTTGAACCTAGAAAAAAGTTACAATTGGCAAAAGAGCTTGGATTGCAACCAAGACAAGTTGCTATTTGGTTTCAAAACAAGAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAATACAATAAACTTCAAAATAGTTACAACAATTTGGCTTCAAAGTTTGAATCAATGAAGAAGGAAAGACAAACATTACTAATACAGTTGCAGAAGCTGAATGATCTAATACAAAAGCCAATAGAGCAAAGTCAAAGTAGTTCACAAGTTAAAGAAGCAAACAGCATGGAAAGTGAATCAGGAAATGGAGGAACAATAAAATGTGAGGTTGAGGTGAAACCAGGTACTTCAATGGAAAGATCAGAACATGTTCTTGATGTTCTTTCAGATGATGACACAAGCATAAAGGTTGAATACTTTGGAATAGAAAATGAACCTAGCCTAATGAATTTTGCTGAACAATGTGATGGTTCCTTAACATCACCAGAAGATTGGAGTGCTTTTGAATCAAATGATCTATTAGGACAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTGA 741 0.3293 MLEFENMEYGQYSYSTEAGEEETYTTSSTSSMRKKKNKNPKRFSDEQIKSLETMFETESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESESGNGGTIKCEVEVKPGTSMERSEHVLDVLSDDDTSIKVEYFGIENEPSLMNFAEQCDGSLTSPEDWSAFESNDLLGQSSCDYQWWDFWS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00864 246 MobiDBLite consensus disorder prediction 139 164 - -
Tsu08g00864 246 MobiDBLite consensus disorder prediction 15 33 - -
Tsu08g00864 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 16 246 - -
Tsu08g00864 246 Coils Coil 86 134 - -
Tsu08g00864 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 246 IPR045224 GO:0003700
Tsu08g00864 246 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Tsu08g00864 246 MobiDBLite consensus disorder prediction 139 160 - -
Tsu08g00864 246 PRINTS Lambda-repressor HTH signature 65 74 IPR000047 GO:0003677
Tsu08g00864 246 PRINTS Lambda-repressor HTH signature 74 90 IPR000047 GO:0003677
Tsu08g00864 246 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Tsu08g00864 246 SUPERFAMILY Homeodomain-like 24 96 IPR009057 -
Tsu08g00864 246 Pfam Homeobox associated leucine zipper 94 135 IPR003106 GO:0006355|GO:0043565
Tsu08g00864 246 Gene3D - 19 101 - -
Tsu08g00864 246 CDD homeodomain 43 95 IPR001356 GO:0003677
Tsu08g00864 246 MobiDBLite consensus disorder prediction 15 47 - -
Tsu08g00864 246 Pfam Homeodomain 41 92 IPR001356 GO:0003677
Tsu08g00864 246 SMART HOX_1 34 98 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00864 Tsu-Chr8 9419455 9421111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00864 16 246 Homeobox Transcription Factor Family AT2G46680 48.837 8.06e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu08g00864 Homeodomain 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00864 K09338 - gmx:100797862 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00864 08 9419455 9421111 Tsu08g00864 08 9419455 9421111 ECH